Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq23389 105 6e-18 seq11312 98.7 8e-16 seq4549 93.3 4e-14 >seq23389 Length=58516 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 115283 AAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCC 115342 || ||||| |||||||| ||||| || ||||| || ||||| || | || || || Sbjct 44631 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 44572 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 |||||| ||| | | |||||| || ||| || ||||| || | || || Sbjct 44571 TCGGACACTATTGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 44512 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| || | |||| || || || ||||| ||||||| | || || |||||||| Sbjct 44511 CAGCAGCGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCCGATTAT 44452 Query 115463 AACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGA 115513 || ||||||||||| || || ||||| | ||| || | |||||||| ||| Sbjct 44451 AATATTCAAAAAGAATCCACCTTACATCTTGTGCTGCGTTTGCGAGGTGGA 44401 >seq11312 Length=46762 Score = 98.7 bits (108), Expect = 8e-16 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 115281 TAAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGT 115340 |||||||||||||||| || ||||| || || || ||||| ||||| | ||| ||| Sbjct 38151 TAAAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGC 38210 Query 115341 CCAGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTG 115400 | ||||||| ||| | | || || |||||| |||||||||||| | || | Sbjct 38211 CTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAG 38270 Query 115401 ATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATT 115460 |||| ||| | | |||| || ||||| ||||| ||||||| || | |||| | Sbjct 38271 ATCAACAACGTTTGATTTTCGCTGGCAAGCAATTGGAAGATGGACGCACGTTATCCGACT 38330 Query 115461 ATAACATTCAAAAAGAGTCTAC 115482 | ||||| ||||| ||||| || Sbjct 38331 ACAACATACAAAAGGAGTCGAC 38352 >seq4549 Length=20005 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||||||||| |||||||| | || || || ||||| ||| | ||| ||| | | Sbjct 19707 ATGCAAATTTTCGTCAAAACATTGACTGGCAAGACCATCACCCTAGAAGTCGAGCCTTCC 19766 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | | || || |||||| || || ||||| | ||| |||||| Sbjct 19767 GACACCATTGAAAACGTCAAGGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 19826 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||| | | |||| ||| ||||| ||||| ||||| | ||| | | ||||| ||| Sbjct 19827 CAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCCTATCTGATTACAAC 19886 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGT 115494 |||||||| ||||| || | ||| |||| Sbjct 19887 ATTCAAAAGGAGTCGACATTGCATTTGGT 19915 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 115282 AAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTC 115341 |||||||||||| ||||| ||||| | || || ||||| ||||| | ||| || | Sbjct 19475 AAAAATGCAAATCTTTGTAAAAACATTAACTGGCAAAACTATTACTTTGGAAGTTGA-AC 19533 Query 115342 CAGC-GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTG 115400 || | || ||| | | | | || || |||||| || || ||||| | ||| | Sbjct 19534 CATCGGATACTATCGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAG 19593 Query 115401 ATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATT 115460 |||||||| | | |||| ||| ||||| ||||| ||||| | ||| || | |||| Sbjct 19594 ATCAGCAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCTGATT 19653 Query 115461 ATAACATTCAAAAAGAGTCTACTATACATATGGT 115494 | || ||||| || ||||| || | ||| |||| Sbjct 19654 ACAATATTCAGAAGGAGTCGACATTGCATTTGGT 19687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425219218824520