Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq23389 125 7e-24 seq4550 125 7e-24 seq4549 125 7e-24 seq11312 118 1e-21 seq17808 91.5 1e-13 seq15038 87.8 2e-12 >seq23389 Length=58516 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||||||||||||| | ||||| ||| || || |||||||| || |||||| | Sbjct 44402 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 44461 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| || || | ||||| || ||| | || || ||||||||||| || || Sbjct 44462 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCGGGTGGA 44521 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||||| |||||||| ||| | | || || | | || | ||| || | || |||| Sbjct 44522 ATTCCCTCTTTGTC-CTGAATCTTGGCTTTTACATTTTCAATAGTGTCCGAGGGTTCGAC 44580 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || ||||| |||||||| ||||||||||| Sbjct 44581 CTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 44628 >seq4550 Length=29190 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| ||| ||||| | || || |||||||| ||||||||||| | Sbjct 5514 CCACCACGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGAC 5455 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || | |||||| || || |||| |||||||||||||| ||||| Sbjct 5454 AATGTGCGCCCATCTTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 5395 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| |||||| ||||| | | | || | |||||| | || || | Sbjct 5394 ATACCTTCCTTGTCCTGGATTTT-TGCTTTAACGTTTTCGATAGTATCCGATGATTCTAC 5336 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||| ||||| | ||| || || || || ||||| Sbjct 5335 CTCCAAAGTGATGGTTTTGCCGGTCAAAGTCTTAACAAATATTTGCAT 5288 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||||| ||| ||||| | || || |||||||| ||||||||||| | Sbjct 5742 CCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGAC 5683 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || | ||| ||||| || |||| |||||||||||||| ||||| Sbjct 5682 AATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 5623 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| |||||| ||||| | | | || | ||| || | | || | Sbjct 5622 ATACCTTCCTTGTCCTGGATTTT-TGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCAC 5564 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||||| || || | |||||| || || || ||||| Sbjct 5563 CTCCAAAGTAATCGTTTTCCCAGTCAAAGTTTTAACAAATATTTGCAT 5516 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||||| ||| || || | || || |||||||| ||||||||||| | Sbjct 5970 CCTCCGCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCCGAC 5911 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || | ||| ||||| || |||| |||||||||||||| ||||| Sbjct 5910 AATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 5851 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| |||||| ||||| | | | || | ||| || | | || | Sbjct 5850 ATACCTTCCTTGTCCTGGATTTT-TGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCAC 5792 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||||| || || | |||||| || || || ||||| Sbjct 5791 TTCCAAAGTGATCGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 5744 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||||||| | || ||||| | ||||| || || ||||||||||| ||| Sbjct 5286 CCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAG 5227 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| | || | ||| ||||| || |||| |||||||| || || || ||| Sbjct 5226 AGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGTTGATCTGGTGGG 5167 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 | ||||||||| || ||| ||| | || | | | ||| | |||||||| | ||| | Sbjct 5166 ACTCCTTCTTTATC-TTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAAC 5108 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||||| || || | || || ||||| |||||||| Sbjct 5107 CTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCAT 5060 >seq4549 Length=20005 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| ||| || || ||||| | |||||||||||||||||||||||||| Sbjct 19933 CCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAATCAGAT 19874 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||| || | |||||||| || | || ||||| ||||| || || || Sbjct 19873 AGGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGA 19814 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||||| ||||| | || | || |||| | ||||| Sbjct 19813 ATACCTTCCTTGTCTTGAATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGACT 19754 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || | ||||| |||||||| ||||| Sbjct 19753 TCTAGGGTGATGGTCTTGCCAGTCAATGTTTTGACGAAAATTTGCAT 19707 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| || || ||||| | ||||||||||| ||||| |||||||| | Sbjct 19705 CCACCGCGTAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCAGAC 19646 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||| || | |||||||| || | || ||||| ||||| || || || Sbjct 19645 AAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGA 19586 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||||| ||| | | || | |||||| | | || | Sbjct 19585 ATACCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCGATAGTATCCGATGGTTCAACT 19526 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||||| || |||| |||||||| || || ||||| Sbjct 19525 TCCAAAGTAATAGTTTTGCCAGTTAATGTTTTTACAAAGATTTGCAT 19479 >seq11312 Length=46762 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| || || || || | ||||||||||||||| |||||||| ||| Sbjct 38383 GCCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTGTAGTCGGA 38324 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| || || | |||||||| ||| | || ||||| || || || ||||| Sbjct 38323 TAACGTGCGTCCATCTTCCAATTGCTTGCCAGCGAAAATCAAACGTTGTTGATCTGGAGG 38264 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || |||||||| || ||||| ||||| | || | ||| |||| | ||| | Sbjct 38263 AATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAAC 38204 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||||| || || |||||||| |||||||| ||||| Sbjct 38203 TTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCAT 38156 >seq17808 Length=19168 Score = 91.5 bits (100), Expect = 1e-13 Identities = 109/146 (75%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 146401 ATACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAG 146460 ||| ||||| |||||| | | ||||||||| || |||||||| | ||||| ||||| | Sbjct 18278 ATAAGTTTCAATAGCGGCCTCAATGTCGTCACCGTGAATGCCAATGGCGACACGCATCAA 18219 Query 146461 CATGTGTTGGGGCCGCTCCGCCACTTGATTGTCAATCTTTAACAAATA--GCCGTTCTCC 146518 ||| || || || |||||| | | || | ||||||||||||||| ||||||| Sbjct 18218 CATATGCTGTGGTCGCTCCACAATTTTTCCATTAATCTTTAACAAATAAGACCGTTCT-- 18161 Query 146519 AGGGTTTTGTATCCGAAAAATTTGTA 146544 | |||||| | || ||||| ||||| Sbjct 18160 AAAGTTTTGAAGCCAAAAAAATTGTA 18135 >seq15038 Length=36294 Score = 87.8 bits (96), Expect = 2e-12 Identities = 112/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 145617 TATTGACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGC-GTCGCTGTATTGT 145675 |||| | || || || |||| ||| |||||||| | || || || | || | |||| Sbjct 5353 TATTCAACGCAATTGATGCCAGATTGCAAACTGCTATTTCTTCAGCCGACG-TATATTCG 5411 Query 145676 ACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTC 145735 ||||| || | || || || || ||||| || || || | ||| || ||||||||||| Sbjct 5412 ACGATTTCTGTACATAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGATTACTTTTG 5471 Query 145736 CTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767 | |||||| ||||| ||||| |||||||| || Sbjct 5472 CGGTTGCAAGCGTCTTTGTAAAGCATGTAAGG 5503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471870777248640