Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq4549 147 1e-30 seq18731 131 1e-25 seq8544 127 1e-24 seq4550 109 4e-19 seq14407 107 1e-18 seq11312 105 4e-18 seq23389 91.5 1e-13 >seq4549 Length=20005 Score = 147 bits (162), Expect = 1e-30 Identities = 177/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | |||||||| | || |||||| |||||||||||||||| Sbjct 19707 TACCACCGCGTAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCAG 19648 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| |||| || ||||| || || ||||| || | ||||| ||||| | || Sbjct 19647 ACAAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGG 19588 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| ||||| |||||| ||| ||||| | || |||||| ||||| Sbjct 19587 GAATACCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCGATAGTATCCGATGGTTCAA 19528 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTACAAGC 38328 |||| || ||||||||||| || || || ||||| || || || ||||| ||||| || | Sbjct 19527 CTTCCAAAGTAATAGTTTTGCCAGTTAATGTTTTTACAAAGATTTGCATTTTTTAAAATC 19468 Query 38329 T 38329 | Sbjct 19467 T 19467 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || ||| | |||||||| | || |||||||||||| |||||||||| Sbjct 19935 TACCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAATCAG 19876 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | ||| |||| || ||||| || || ||||| || | ||||| ||||| | || Sbjct 19875 ATAGGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGG 19816 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | ||||| ||||| |||||| ||| || || | | || || | || | Sbjct 19815 GAATACCTTCCTTGTCTTGAATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGA 19756 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||||| || || || || || ||||| ||||| ||||| || ||||| Sbjct 19755 CTTCTAGGGTGATGGTCTTGCCAGTCAATGTTTTGACGAAAATTTGCAT 19707 >seq18731 Length=5426 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 5143 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAAGAATCTCGT 5084 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 5083 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 5049 >seq8544 Length=65021 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||| |||||||||||||||||| |||||||| Sbjct 62337 AAGCCCGTTCCCTTGGCTGTGGTTTTGCTAGATAGTAGATAGGGACAGAAAGAATCTCGT 62396 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 62397 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 62431 >seq4550 Length=29190 Score = 109 bits (120), Expect = 4e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38102 ACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTC 38161 |||||||||||| |||||||| |||||||| || |||||||| ||||| || | Sbjct 5959 ACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCC 5900 Query 38162 GTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTT 38221 || || || ||||| || ||||| || | || || || || | || | ||||| || Sbjct 5899 ATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTT 5840 Query 38222 GTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TTTCAACTTCTAATGTAA 38280 |||| |||||| || || || | || ||| || | || ||| ||||| || || | Sbjct 5839 GTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTC-CGACGGTTCCACTTCCAAAGTGA 5781 Query 38281 TAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| || ||||| ||||| || ||||| ||||| Sbjct 5780 TCGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 5744 Score = 107 bits (118), Expect = 1e-18 Identities = 166/233 (71%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||||||||||||||| | ||| |||||||| || ||||||| Sbjct 5746 CATT-CCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAAT 5688 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | ||||| || | || || || ||||| || ||||| || | || || || || | Sbjct 5687 CCGACAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTG 5628 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCAC-TT 38264 || | ||||| |||||| |||||| || || || | || ||| || | || | Sbjct 5627 GAGGAATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTC-CGACGGT 5569 Query 38265 TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || ||||| ||||| || ||||| ||||| || ||||| ||||| Sbjct 5568 TCCACCTCCAAAGTAATCGTTTTCCCAGTCAAAGTTTTAACAAATATTTGCAT 5516 Score = 100 bits (110), Expect = 2e-16 Identities = 162/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||||||||||||||| | ||| |||||||| || ||||||| Sbjct 5518 CATT-CCACCACGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAAT 5460 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | ||||| || | || || || || ||||| ||||| || | || || || || | Sbjct 5459 CCGACAATGTGCGCCCATCTTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTG 5400 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | ||||| |||||| |||||| || || || | || |||||| || Sbjct 5399 GAGGAATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATT 5340 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || || || ||||| || ||||| || || || ||||| ||||| Sbjct 5339 CTACCTCCAAAGTGATGGTTTTGCCGGTCAAAGTCTTAACAAATATTTGCAT 5288 >seq14407 Length=25941 Score = 107 bits (118), Expect = 1e-18 Identities = 151/210 (72%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 6161 GATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCC 6220 |||||| | | || || || |||||||| | || ||||| || ||||||||||| Sbjct 22549 GATGGGTTCGGTTAATGTGAACCGTAATGTCACCGATATTTTCTATCGTTACAAAATGCC 22490 Query 6221 GCGCATCTGC--GCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAAC 6278 ||| | ||| ||||| ||||| ||||| || || || |||||||| || || || || Sbjct 22489 GCG--TTTGCAAGCCAAAGTCGAAGGTAAAGGCAATGGCATTAAAACGGTTATAGTTAAT 22432 Query 6279 ATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGG 6338 ||| | ||||| || || | ||||| || ||||| || || || ||||| || || Sbjct 22431 ATGGCCGAAGTGGCACGAGCCATAGGACGACCAGCCACTTATCCAACCAAATACTTTGGT 22372 Query 6339 TGCGAACTTGGCGCTCAGACGCAGTTTGAT 6368 || ||| | || ||||| || ||| ||||| Sbjct 22371 TGTGAATTGGGTGCTCAAACTCAGCTTGAT 22342 >seq11312 Length=46762 Score = 105 bits (116), Expect = 4e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 ||||||||| || ||||| || || || ||| | || || ||||| || || || || Sbjct 38347 CTCCTTTTGTATGTTGTAGTCGGATAACGTGCGTCCATCTTCCAATTGCTTGCCAGCGAA 38288 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || | ||||||||||| | || | ||||||||| ||| |||||| ||| ||||| Sbjct 38287 AATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATT 38228 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 | | ||| || | |||||||| || ||||||||||| || || | ||||| || Sbjct 38227 TTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAAC 38168 Query 38306 GAATATCTGCATGTTT 38321 ||| || ||||| ||| Sbjct 38167 GAAAATTTGCATTTTT 38152 >seq23389 Length=58516 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||||| |||||||| ||| | ||| | ||| || ||||||||||| ||||| ||| Sbjct 44402 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 44461 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || || | || || ||||| ||||| || || || | || || || |||| || Sbjct 44462 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCGGGTGGA 44521 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || ||||||||| ||| || || ||||| | | ||| || ||| || Sbjct 44522 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCAATAGTGTCCGAGGGTTCGACC 44581 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || | || || || || ||||| | |||||| || || |||||||| || Sbjct 44582 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 44631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334848938110001