Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq4550 154 1e-32 seq23389 132 4e-26 seq4549 118 9e-22 >seq4550 Length=29190 Score = 154 bits (170), Expect = 1e-32 Identities = 163/212 (77%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||| || |||||||| || ||| | ||||| | |||||||| |||| Sbjct 5743 AATGCAAATATTTGTTAAAACTTTGACTGGAAAAACGATCACTTTGGAAGTGGAACCGTC 5802 Query 25058 TGACACTATCG-AGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||||| | | | |||| ||||||| ||||| ||||| ||||| || |||| Sbjct 5803 GGACACTATCGAAAACGTTAAAGC-AAAAATCCAGGACAAGGAAGGTATTCCTCCAGACC 5861 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || ||||| |||||||| || ||||||| ||||| || ||||||| Sbjct 5862 AGCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCGGATTACA 5921 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTG 25208 | || ||||| ||||| || || || || ||| Sbjct 5922 ACATACAAAAGGAATCTACTCTTCACTTGGTG 5953 Score = 150 bits (166), Expect = 2e-31 Identities = 162/212 (76%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||| || |||||||| || ||| | || || | || ||||| |||| Sbjct 5515 AATGCAAATATTTGTTAAAACTTTGACTGGGAAAACGATTACTTTGGAGGTGGAACCGTC 5574 Query 25058 TGACACTATCG-AGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||||| | | | |||| ||||||| ||||| ||||| ||||| || |||| Sbjct 5575 GGACACTATCGAAAACGTTAAAGC-AAAAATCCAGGACAAGGAAGGTATTCCTCCAGACC 5633 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | || ||||| |||||||| || ||||||| ||||| || ||||||| Sbjct 5634 AGCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCGGATTACA 5693 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTG 25208 | || ||||| |||||||| | ||||| ||| Sbjct 5694 ACATACAAAAGGAATCCACATTGCATTTGGTG 5725 Score = 149 bits (164), Expect = 5e-31 Identities = 161/211 (76%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| |||||||||||||| ||| ||||||| | || || || || || Sbjct 5288 ATGCAAATATTTGTTAAGACTTTGACCGGCAAAACCATCACTTTGGAGGTAGAATCATCG 5347 Query 25059 GACACTATCG-AGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||||| | | | |||| ||||||| ||||| ||||| ||||| || ||||| Sbjct 5348 GATACTATCGAAAACGTTAAAGC-AAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCA 5406 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||| || || || || ||||||| ||||| || |||||||| Sbjct 5407 GCAGCGTTTGATCTTTGCTGGAAAGCAGTTGGAAGATGGGCGCACATTGTCGGATTACAA 5466 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTG 25208 || ||||| |||||||| | ||||| ||| Sbjct 5467 CATACAAAAGGAATCCACATTGCATTTGGTG 5497 >seq23389 Length=58516 Score = 132 bits (146), Expect = 4e-26 Identities = 160/215 (74%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || |||||||| || | || || || ||||||| | || || || | || Sbjct 44628 ATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCCTCG 44569 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| || | || |||| || | ||| |||||||| || |||||||| ||| Sbjct 44568 GACACTATTGAA--AATGTAAAAGCCAAGATTCAG-GACAAAGAGGGAATTCCACCCGAC 44512 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | ||||| || || || ||||| ||||||| ||||| || |||||| Sbjct 44511 CAGCAGCGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCCGATTAT 44452 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||||||||||||||| ||||| | ||||| Sbjct 44451 AATATTCAAAAAGAATCCACCTTACATCTTGTGCT 44417 >seq4549 Length=20005 Score = 118 bits (130), Expect = 9e-22 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || ||||||||| |||||||| || || || || ||| | || || | ||||| || | Sbjct 19475 AAAAATGCAAATCTTTGTAAAAACATTAACTGGCAAAACTATTACTTTGGAAGTTGAACC 19534 Query 25055 GTCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 || || |||||||| | ||| | |||| ||| ||||| ||||| ||||| || | Sbjct 19535 ATCGGATACTATCGAAAATGTTAAGGCTAAAATTCAA-GACAAGGAAGGTATTCCCCCAG 19593 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | || || || | |||||||| ||||| ||||| ||||| | ||||| || |||| Sbjct 19594 ATCAGCAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCTGATT 19653 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||||| || || || || | ||||| || ||| | ||| | || || Sbjct 19654 ACAATATTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTCTACGCGGTGG 19705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433200876595865