Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq9454 338 7e-88 seq8016 118 1e-21 seq2237 114 1e-20 >seq9454 Length=16677 Score = 338 bits (374), Expect = 7e-88 Identities = 501/702 (71%), Gaps = 6/702 (1%) Strand=Plus/Minus Query 92926 ATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG-AAGACGTA 92984 ||| || ||| ||||||| || | | |||| |||| ||||| || | ||| || | Sbjct 13705 ATCGGCAACATATTCTATATATTTACACATACTTTCACTGTTCATGCCAATTAAGTCG-A 13647 Query 92985 CAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCTA 93044 | |||| || || ||||| || ||||| || ||| ||||| || | | ||||| | Sbjct 13646 CTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTTACGGCATCAGTTATTATTTCCA 13587 Query 93045 TTACTCTACTATTTGGT-GGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCG 93103 | || | ||| | |||||||||| | || || |||||| |||||| || Sbjct 13586 AAA-TCCGTTCTTTACTCGGTTTTTGTATTAAATGTTTAAACATTAGTACCGCAAATTCA 13528 Query 93104 GTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGT 93163 || || ||||| || |||||||||| ||||| ||||||||||||||| | | | Sbjct 13527 CAGTGCAAGCCTTCATCACGTGATATCATTTCATTAGAGAATGTTAAACCTGGCATTATT 13468 Query 93164 CCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACG 93223 || |||||||| ||||||||||| ||||| || || ||| ||| || |||||||| || Sbjct 13467 CCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTGCCACTAAAGAAAATACCTTCGACA 13408 Query 93224 GCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTAC-TGCTGATCCATTTTAA 93282 || || || || | ||||| ||| ||||||| || |||| || | |||||| || Sbjct 13407 GCAGCGAAAGCTATGATACGCTCGCCAAAATTAGCCGAATGCGATGAT-ATCCATGCTAG 13349 Query 93283 AGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATC 93342 |||||| ||||| || ||||||| | || | ||| || || || ||||| || || || Sbjct 13348 AGCCCATTCGGCCTTCTTCTTAACCAATGGCATTGTCTCAATGGCATTAAAGAGATATTC 13289 Query 93343 TCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGAC 93402 || || | | ||| || ||||| ||||| | ||| ||||||||| ||||| || Sbjct 13288 ACGTTCTTTCTCATCCATGATATATGTTTCGATAAGTAGACTATACATTTCCGAATGCAC 13229 Query 93403 ATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTG 93462 ||| ||||| |||||||| || ||||| || || | |||||| || || || || ||||| Sbjct 13228 ATTTTCCATGGCAATTTGAAAACCGTAAAAGCAACGAGCTTCAGTTATTTGAACCTCTTG 13169 Query 93463 AGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAA 93522 ||||||| || || | ||| ||||| || |||||||||||||| |||||||||||||| Sbjct 13168 GGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGCCGCAAAAAAAGCCAA 13109 Query 93523 TATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTT 93582 | ||| |||||||| || | || | | | || ||||||| | ||||| Sbjct 13108 AACATGTGAAATAAAATGCCGTTCGCCGTCACTTAACCGATTCCAATCGTCCATGTCTTT 13049 Query 93583 TGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 || || || || ||||| |||||||||| || ||||| || Sbjct 13048 AGAGAGGTCAACCTCTTCAGCAGTCCAAAAAGAGGCTTCCGC 13007 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 93626 TTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGG 93685 ||||| ||||| | |||||| || |||||||||||||||| ||||||||||| || || Sbjct 11769 TTTTTATACATCTTCCATATCTCAGGATATTGAATTGGAAAAATGACAAAACGTTTGGGA 11710 Query 93686 TTATCTTTTAGTAACGGCTCTAGTTGTGGGTCAAA 93720 || ||||| || || ||||||| |||||||| Sbjct 11709 TTTTCTTTAAGCAATGGCTCTATGGACGGGTCAAA 11675 >seq8016 Length=74996 Score = 118 bits (130), Expect = 1e-21 Identities = 79/86 (92%), Gaps = 3/86 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCG--GGAGC 126322 |||||||||||||||| ||| |||||||||||||||||| |||||||||| | ||||| Sbjct 34555 AGTCAGGTTGGCCGAGCGGT-TAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 34613 Query 126323 GTGGGTTCGAACCCCACACCTGACAA 126348 |||||||||||||||||||||||||| Sbjct 34614 GTGGGTTCGAACCCCACACCTGACAA 34639 Score = 116 bits (128), Expect = 4e-21 Identities = 78/85 (92%), Gaps = 3/85 (4%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCG--GGAGC 126322 |||||||||||||||| ||| |||||||||||||||||| |||||||||| | ||||| Sbjct 346 AGTCAGGTTGGCCGAGCGGT-TAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 288 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 287 GTGGGTTCGAACCCCACACCTGACA 263 >seq2237 Length=208786 Score = 114 bits (126), Expect = 1e-20 Identities = 85/96 (89%), Gaps = 5/96 (5%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCG--GGAGCG 126323 ||||||||||||||| ||| |||||||||||||||||| |||||||||| | |||||| Sbjct 10464 GTCAGGTTGGCCGAGCGGT-TAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 10522 Query 126324 TGGGTTCGAACCCCACACCTGACA--AATTATTATT 126357 |||||||||||||||||||||||| || | ||||| Sbjct 10523 TGGGTTCGAACCCCACACCTGACATCAAATCTTATT 10558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556693247546040