Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq4550 109 5e-19 seq4549 107 2e-18 seq23389 104 2e-17 seq11312 104 2e-17 >seq4550 Length=29190 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||| ||||| ||||| |||| || ||||| ||||| |||| |||||| Sbjct 5515 AATGCAAATATTTGTTAAAACTTTGACTGGGAAAACGATTACTTTGGAGGTGGAACCGTC 5574 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || || | | | || ||| |||||| ||||| ||||| |||| || || Sbjct 5575 GGACACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCA 5634 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 || | | || | ||| |||||||| ||||||||| || || | ||||| || Sbjct 5635 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCGGATTACAA 5694 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 |||||||| ||||| ||| | ||||| ||||||||||| |||||||| Sbjct 5695 CATACAAAAGGAATCCACATTGCATTTGGTGTTGCGTCTCCGCGGTGG 5742 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 111186 AATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111245 ||||||||| ||||| ||||| |||| || ||||| || || ||||| |||||| Sbjct 5743 AATGCAAATATTTGTTAAAACTTTGACTGGAAAAACGATCACTTTGGAAGTGGAACCGTC 5802 Query 111246 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111305 || || | | | || ||| |||||| ||||| ||||| |||| || || Sbjct 5803 GGACACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCA 5862 Query 111306 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111365 || | | || | ||| |||||||| ||||||||| || || | ||||| || Sbjct 5863 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCGGATTACAA 5922 Query 111366 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 |||||||| |||||||| || || || ||||||||||| ||||| || Sbjct 5923 CATACAAAAGGAATCTACTCTTCACTTGGTGTTGCGTCTCCGCGGAGG 5970 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| ||||| || || |||||||||||||||| || |||| ||| | Sbjct 5288 ATGCAAATATTTGTTAAGACTTTGACCGGCAAAACCATCACTTTGGAGGTAGAATCATCG 5347 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || | | | || ||| |||||| ||||| ||||| |||| || || Sbjct 5348 GATACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCAG 5407 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || | | || | ||| || || || ||||||||| || || | ||||| || Sbjct 5408 CAGCGTTTGATCTTTGCTGGAAAGCAGTTGGAAGATGGGCGCACATTGTCGGATTACAAC 5467 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 |||||||| ||||| ||| | ||||| ||||||||||| || ||||| Sbjct 5468 ATACAAAAGGAATCCACATTGCATTTGGTGTTGCGTCTCCGTGGTGG 5514 >seq4549 Length=20005 Score = 107 bits (118), Expect = 2e-18 Identities = 168/239 (70%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 111176 AGAGTTTAAAA-ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAA 111234 ||| ||||||| |||||||| ||||| ||||| | || |||||||| ||||| ||||| Sbjct 19467 AGATTTTAAAAAATGCAAATCTTTGTAAAAACATTAACTGGCAAAACTATTACTTTGGAA 19526 Query 111235 ACGGAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTT 111294 ||||| ||| || | | | || || |||||| ||||| ||||| || Sbjct 19527 GTTGAACCATCGGATACTATCGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGTATT 19586 Query 111295 CCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATG 111354 ||| ||||| ||| | | |||| ||| ||||| ||||||||||| || || Sbjct 19587 CCCCCAGATCAGCAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTG 19646 Query 111355 GCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 | ||||| ||||| || || || || ||| | ||||| || | ||||| |||||||| Sbjct 19647 TCTGATTACAATATTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTCTACGCGGTGG 19705 Score = 102 bits (112), Expect = 7e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||||||||| |||||||| |||| ||||| ||||| ||| | ||| || || | Sbjct 19707 ATGCAAATTTTCGTCAAAACATTGACTGGCAAGACCATCACCCTAGAAGTCGAGCCTTCC 19766 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | || || |||||| ||||| ||||| ||||| ||||| Sbjct 19767 GACACCATTGAAAACGTCAAGGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 19826 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGA--TTCTAAAACTATGGCCGATTATA 111364 ||| | | |||| ||| ||||| ||||||||||| | | |||| | ||||| | Sbjct 19827 CAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCCTAT--CTGATTACA 19884 Query 111365 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 | || ||||| || || ||| | ||||| || | |||||||||||||| Sbjct 19885 ACATTCAAAAGGAGTCGACATTGCATTTGGTCCTACGTCTGCGCGGTGG 19933 >seq23389 Length=58516 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 111184 AAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111243 || ||||| |||||||| ||||| | || ||||| ||||| || | || |||||| Sbjct 44631 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 44572 Query 111244 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111303 || || ||| | |||||| || ||| |||||||| || |||| ||| Sbjct 44571 TCGGACACTATTGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 44512 Query 111304 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111363 || || | | |||| || || || |||||||||||| || || |||||||| Sbjct 44511 CAGCAGCGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCCGATTAT 44452 Query 111364 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 ||||| ||||||||||| || ||||| | ||| ||||| |||| ||||| Sbjct 44451 AATATTCAAAAAGAATCCACCTTACATCTTGTGCTGCGTTTGCGAGGTGG 44402 >seq11312 Length=46762 Score = 104 bits (114), Expect = 2e-17 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 111176 AGAGTTTAAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAA 111235 ||| | |||||||||||||||| || ||||| | || |||||||| ||||| ||||| Sbjct 38145 AGAATATAAAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAG 38204 Query 111236 CGGAACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTC 111295 || || ||| || ||| | || || |||||| || ||||||||| ||| Sbjct 38205 TTGAGCCTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTC 38264 Query 111296 CCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGG 111355 | ||||||||| | | |||| || ||||| |||||||||||| || | Sbjct 38265 CTCCAGATCAACAACGTTTGATTTTCGCTGGCAAGCAATTGGAAGATGGACGCACGTTAT 38324 Query 111356 CCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 |||| || || |||||||| || || || | || || || | ||||| || ||||||| Sbjct 38325 CCGACTACAACATACAAAAGGAGTCGACCTTGCACTTGGTACTCCGTCTCCGTGGTGGCA 38384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422915894738200