Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq23255 91.5 3e-13 seq18035 91.5 3e-13 seq12081 91.5 3e-13 seq7691 91.5 3e-13 seq6088 91.5 3e-13 seq2469 87.8 4e-12 >seq23255 Length=44273 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 20827 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 20768 Query 142564 CCCACATCGGGCAGAAG 142580 ||||| | |||| |||| Sbjct 20767 CCCACGTTGGGC-GAAG 20752 >seq18035 Length=68916 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142051 ATGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGA 142110 ||||| || ||||||| ||| ||||||||||||||||||||||||||| |||||||||| Sbjct 46997 ATGTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGA 46938 Query 142111 CCCCCGCCAGAGA 142123 |||||| || || Sbjct 46937 TCCCCGCAAGGGA 46925 Score = 91.5 bits (100), Expect = 3e-13 Identities = 69/80 (86%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||| || ||||||| ||| ||||||||||||||||||||||||||| |||||||||| Sbjct 50486 TGTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGAT 50427 Query 142112 CCCCGCCAGAGACG-CCAGG 142130 |||||| || || | ||||| Sbjct 50426 CCCCGCAAGGGATGTCCAGG 50407 >seq12081 Length=194638 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 125909 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 125850 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 125849 CCCCACGTTGGGC 125837 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 33603 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 33662 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 33663 CCCACGTTGGGC 33674 >seq7691 Length=31942 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 7357 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 7416 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 7417 CCCCACGTTGGGC 7429 >seq6088 Length=173829 Score = 91.5 bits (100), Expect = 3e-13 Identities = 76/92 (83%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 39725 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 39666 Query 142564 CCCACATCGGGCAGAAGTCGCCGTCTTTTGAT 142595 ||||| | |||| ||| | | |||||| || Sbjct 39665 CCCACGTTGGGC--GAGTGGACTTCTTTTTAT 39636 >seq2469 Length=52869 Score = 87.8 bits (96), Expect = 4e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112 ||| || ||||||| ||| ||||||||||||||||||||||||||| |||||||||| | Sbjct 3630 GTCCCTTTGGCGCAGAGGATAGCGCGTTGGACTTCTAATCCAAAGGTCGCGGGTTCGATC 3689 Query 142113 CCCGCCAGAGA 142123 ||||| || || Sbjct 3690 CCCGCAAGGGA 3700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027519805173711