Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq4550 109 4e-19 seq4549 104 2e-17 >seq4550 Length=29190 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||||||| ||||||| || || || ||||| || || ||||| |||| | | Sbjct 5743 AATGCAAATATTTGTTAAAACTTTGACTGGAAAAACGATCACTTTGGAAGTGGAACCGTC 5802 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | |||| |||||| || || || ||| | ||| | |||| Sbjct 5803 GGACACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCA 5862 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | ||||||||||||||||| | |||||| || || | |||||||| Sbjct 5863 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCGGATTACAA 5922 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || ||||||||||||||||| |||| || ||| | || ||||| Sbjct 5923 CATACAAAAGGAATCTACTCTTCACTTGGTGTTGCGTCTCCGCGGAGG 5970 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||||||| ||||||| || || || ||||| ||||| |||| |||| | | Sbjct 5515 AATGCAAATATTTGTTAAAACTTTGACTGGGAAAACGATTACTTTGGAGGTGGAACCGTC 5574 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | |||| |||||| || || || ||| | ||| | |||| Sbjct 5575 GGACACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCA 5634 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | ||||||||||||||||| | |||||| || || | |||||||| Sbjct 5635 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCGGATTACAA 5694 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || || |||||||| || | ||| |||| || ||| | || || ||| Sbjct 5695 CATACAAAAGGAATCCACATTGCATTTGGTGTTGCGTCTCCGCGGTGGA 5743 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 |||||||| || || | || ||||| || || ||||| || ||| |||| || | Sbjct 5057 AAAATGCAGATCTTCGTGAAGACATTGACTGGGAAAACTATCACCTTGGAGGTTGAGCCA 5116 Query 21891 GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 | || || | | || |||| |||||| |||||||| || || || | | Sbjct 5117 TCCGATACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAAGGAGTCCCACCAGAT 5176 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 |||||| | | ||||||||||||||||| | ||| || || | |||| ||| Sbjct 5177 CAACAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCCGACTAC 5236 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || |||||||| ||||| || || ||| |||| |||||||| || || || Sbjct 5237 AACATTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGG 5286 >seq4549 Length=20005 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 ||||||||||| ||| | ||||||||||| |||||||| ||||| ||||| ||| | Sbjct 19476 AAAATGCAAATCTTTGTAAAAACATTAACTGGCAAAACTATTACTTTGGAAGTTGAACCA 19535 Query 21891 GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 | || || | | || ||||| |||||| || || || ||| | || | | Sbjct 19536 TCGGATACTATCGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGAT 19595 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || || | | || ||||||||||| ||| | ||||| | || || | |||||| Sbjct 19596 CAGCAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCTGATTAC 19655 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||| || || | ||| |||| ||||| |||| || || Sbjct 19656 AATATTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTCTACGCGGTGG 19705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358019738606134