Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq23389 134 1e-26 seq4550 127 2e-24 seq11312 104 2e-17 seq4549 91.5 1e-13 seq181 82.4 6e-11 >seq23389 Length=58516 Score = 134 bits (148), Expect = 1e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 114179 ATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTG 114238 ||||| || |||||||||||||| || |||||| || || || |||||| | ||| Sbjct 44425 ATGTAAGGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGGCCATCTTCCAATTG 44484 Query 114239 TTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTT 114298 || |||||| | || | ||||| ||||| || ||||| || |||||||| |||||| Sbjct 44485 CTTTCCAGCGAAAATCAATCGCTGCTGGTCGGGTGGAATTCCCTCTTTGTCCTGAATCTT 44544 Query 114299 TTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGT 114358 ||||| | ||||| ||||| | || |||||| || | || | || ||||| || Sbjct 44545 GGCTTTTACATTTTCAATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGTCTTGCCCGT 44604 Query 114359 CAGAGTTTTTACAAAAATCTGCAT 114382 || |||||||||||||||||||| Sbjct 44605 TAGGGTTTTTACAAAAATCTGCAT 44628 >seq4550 Length=29190 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || || || | ||| || || || | |||||||| ||||| ||||||||||| Sbjct 5971 ACCTCCGCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCCGA 5912 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || || || |||||| | ||||| ||||| |||| | |||||| ||||| ||||| Sbjct 5911 CAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 5852 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGA 114333 ||| ||||| ||||| || ||||| |||| | | ||| | ||||| | | ||| | Sbjct 5851 AATACCTTCCTTGTCCTGGAT-TTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCA 5793 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | |||| || | |||||| || |||| |||||| ||||| || ||||| Sbjct 5792 CTTCCAAAGTGATCGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 5744 Score = 125 bits (138), Expect = 6e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | ||| || ||||| | || ||||| ||||| ||||||||||| Sbjct 5517 ATTCCACCACGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCC 5458 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| | || || ||||| |||| | |||||| ||||| ||| Sbjct 5457 GACAATGTGCGCCCATCTTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGA 5398 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 ||||| ||||| ||||| || ||||| |||| | | ||| | || || | ||||| Sbjct 5397 GGAATACCTTCCTTGTCCTGGAT-TTTTGCTTTAACGTTTTCGATAGTATCCGATGATTC 5339 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||||||||||||| ||| || ||||| || ||||| Sbjct 5338 TACCTCCAAAGTGATGGTTTTGCCGGTCAAAGTCTTAACAAATATTTGCAT 5288 Score = 125 bits (138), Expect = 6e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || || || || | ||| || ||||| | || ||||| ||||| ||||||||||| Sbjct 5745 ATTCCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCC 5686 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| | ||||| ||||| |||| | |||||| ||||| ||| Sbjct 5685 GACAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGA 5626 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 ||||| ||||| ||||| || ||||| |||| | | ||| | ||||| | | ||| Sbjct 5625 GGAATACCTTCCTTGTCCTGGAT-TTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTC 5567 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | |||||| || |||| |||||| ||||| || ||||| Sbjct 5566 CACCTCCAAAGTAATCGTTTTCCCAGTCAAAGTTTTAACAAATATTTGCAT 5516 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| | | ||||| ||||| | || |||||||| ||||||||||| ||| Sbjct 5289 ATACCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCG 5230 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || ||| | ||||| ||||| |||| | ||||||||| || || Sbjct 5229 GAGAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGTTGATCTGGT 5170 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 || | |||||||| || ||| ||| |||||| | | |||| || |||| | || Sbjct 5169 GGGACTCCTTCTTTATCTTGAAT-TTTAGTTTTAACATTCTCAATAGTATCGGATGGCTC 5111 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | ||||| || |||| || || || || |||||||| Sbjct 5110 AACCTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCAT 5060 >seq11312 Length=46762 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || || || | || || || ||||| |||||||| ||| Sbjct 38385 ATGCCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTGTAGTCG 38326 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || |||||| | ||| || |||||| | || | ||| ||||| || ||| Sbjct 38325 GATAACGTGCGTCCATCTTCCAATTGCTTGCCAGCGAAAATCAAACGTTGTTGATCTGGA 38266 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||||||||| || ||| || || | | ||||| ||||||| | || Sbjct 38265 GGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCA 38206 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | |||||||| || |||||||| || ||||| ||||| Sbjct 38205 ACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCAT 38156 >seq4549 Length=20005 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || || | | || ||||| | || || || ||||||||||||||||| Sbjct 19936 ATACCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAATCA 19877 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || ||||| | ||| || ||||| | || | ||| || || || || Sbjct 19876 GATAGGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGG 19817 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| ||| || || | | ||||| |||||||| | ||| Sbjct 19816 GGAATACCTTCCTTGTCTTGAATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCG 19757 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| |||| ||||| || ||||| ||||| Sbjct 19756 ACTTCTAGGGTGATGGTCTTGCCAGTCAATGTTTTGACGAAAATTTGCAT 19707 >seq181 Length=60274 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||| ||| | ||||| ||||| | || || | ||||| ||||| || || Sbjct 37551 ATACCACCAAGTAAACGTAAAACCAAATGGAGAGTCGAGCCCTTTTGTATGTTATAGTCC 37610 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | | || | | |||||| || || || || ||||| || | ||| |||| | || Sbjct 37611 ATTAATGTGCAACCATCTTCCAGCTGCTTGCCGGCGTAAATCAAACGACGTTGATTTGGT 37670 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| ||||| | |||||| ||| | | ||||| || ||||| | |||| Sbjct 37671 GGGATGCCGTCTTTATTCCGAATCTTGGTTTTAATCGTTTCAATAGTATCGGTCGGTTCG 37730 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || || || | ||||| || ||||||||||| Sbjct 37731 ACATCTAAAGTGATGGTATTTCCCGTTAACGTTTTCACGAAAATCTGCAT 37780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420011147140452