Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq11308 104 2e-17 seq16716 96.9 3e-15 seq4550 87.8 1e-12 >seq11308 Length=1333 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 129 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 70 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 69 ATAACTGATATAATGAGCCTTTTGCGGTTTC 39 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 129 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 70 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 69 ATAACTGATATAATGAGCCTTTTGCGGTTTC 39 >seq16716 Length=1028 Score = 96.9 bits (106), Expect = 3e-15 Identities = 72/82 (88%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| | |||||||||||||| | ||||||||||||| Sbjct 86 CATGTATTAGCTCTAGAATTACCACAGATATCCAAGTAACTGTTAACGATCTAAGGAACC 27 Query 115589 AAAACTGATATATTGAGCCATT 115610 | |||||||||| |||||| || Sbjct 26 ATAACTGATATAATGAGCCTTT 5 Score = 96.9 bits (106), Expect = 3e-15 Identities = 72/82 (88%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| | |||||||||||||| | ||||||||||||| Sbjct 86 CATGTATTAGCTCTAGAATTACCACAGATATCCAAGTAACTGTTAACGATCTAAGGAACC 27 Query 114392 AAAACTGATATATTGAGCCATT 114413 | |||||||||| |||||| || Sbjct 26 ATAACTGATATAATGAGCCTTT 5 >seq4550 Length=29190 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | || |||| ||||| ||||| || ||||| || ||||||||||| | Sbjct 5971 ACCTCCGCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCCGA 5912 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 |||| ||| | || ||||| || ||||| ||||| |||| |||||||| || || Sbjct 5911 CAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 5852 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGC 34078 | | || |||||| | ||||||||| | | || | | | || | | ||| Sbjct 5851 AATACCTTCCTTGTCC-TGGATTTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCA 5793 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 ||| | || || |||||||| || | ||||| ||||| ||||||||| Sbjct 5792 CTTCCAAAGTGATCGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCATT 5743 Score = 82.4 bits (90), Expect = 6e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || |||| ||||| ||| | ||| ||||| || ||||||||||| | |||| ||| Sbjct 5505 AGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGC 5446 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || ||||| ||||| || ||||| |||| |||||||| || || | | || Sbjct 5445 CCATCTTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCC 5386 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||||| | ||||||||| | | || | | |||| | ||||| || | || Sbjct 5385 TTGTCC-TGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCTACCTCCAAAGT 5327 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || ||||| ||||| | || || ||||| |||||||| Sbjct 5326 GATGGTTTTGCCGGTCAAAGTCTTAACAAATATTTGCAT 5288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396945915664942