Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq4550 136 9e-27 seq11312 132 1e-25 seq4549 114 3e-20 >seq4550 Length=29190 Score = 136 bits (150), Expect = 9e-27 Identities = 146/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| || || || ||||||| ||| ||||| || | ||| || ||||| || || || Sbjct 5251 TTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAA 5192 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| |||||||||| ||||| |||||||||||| || ||||| | ||| || || Sbjct 5191 GATCAAACGCTGTTGATCTGGTGGGACTCCTTCTTTATCTTGAATTTTAGTTTTAACATT 5132 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || |||| |||| | || || || | ||||| || ||||| |||| ||||| || Sbjct 5131 CTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCAC 5072 Query 288462 GAATATCTGCATT 288474 ||| ||||||||| Sbjct 5071 GAAGATCTGCATT 5059 Score = 134 bits (148), Expect = 3e-26 Identities = 169/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| ||||| | | || | ||| | ||| ||| ||||| || || || || | Sbjct 5515 TCCACCACGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGA 5456 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | ||||| || ||||| || || ||||| || ||||||| |||||| || ||||| Sbjct 5455 CAATGTGCGCCCATCTTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGG---TCTGG 5399 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 || ||||| || ||||||||||| ||||| |||||||| |||| ||| ||||| Sbjct 5398 AGGAATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATTC 5339 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||| || | ||||| || || ||||||| |||||| || ||||| ||||| Sbjct 5338 TACCTCCAAAGTGATGGTTTTGCCGGTCAAAGTCTTAACAAATATTTGCAT 5288 Score = 127 bits (140), Expect = 5e-24 Identities = 168/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||||||||| | | || | ||| | ||| ||| ||||| || || || || | Sbjct 5743 TCCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGA 5684 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | ||||| || ||||| || ||||| || || ||||||| |||||| || ||||| Sbjct 5683 CAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGG---TCTGG 5627 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 || ||||| || ||||||||||| ||||| |||||||| |||| || || ||| Sbjct 5626 AGGAATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTC 5567 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || | || ||||| ||||| |||| ||| || || ||||| |||||| Sbjct 5566 CACCTCCAAAGTAATCGTTTTCCCAGTCAAAGTTTTAACAAATATTTGCATT 5515 Score = 120 bits (132), Expect = 7e-22 Identities = 145/196 (74%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| || || || || | | ||||| || ||||| || ||||| || || || Sbjct 5935 TTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAA 5876 Query 288342 GATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||||| |||||| || ||||| || ||||| || ||||||||||| ||||| || Sbjct 5875 GATCAAACGCTGCTGG---TCTGGAGGAATACCTTCCTTGTCCTGGATTTTTGCTTTAAC 5819 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 |||||| |||| || || ||| ||||| | |||||||| || || |||| ||| || Sbjct 5818 GTTTTCGATAGTGTCCGACGGTTCCACTTCCAAAGTGATCGTTTTTCCAGTCAAAGTTTT 5759 Query 288459 GACGAATATCTGCATT 288474 || ||||| |||||| Sbjct 5758 AACAAATATTTGCATT 5743 >seq11312 Length=46762 Score = 132 bits (146), Expect = 1e-25 Identities = 176/243 (72%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||||| | || | || || ||||| || || ||||||| Sbjct 38382 CCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTGTAGTCGGAT 38323 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||||||| ||||| ||||| || || ||||| |||| ||| |||||| ||||| Sbjct 38322 AACGTGCGTCCATCTTCCAATTGCTTGCCAGCGAAAATCAAACGTTGTTGA---TCTGGA 38266 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || |||||||||||||| ||||| || || || ||||| |||| ||| | || Sbjct 38265 GGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCA 38206 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATTC 288483 ||||| | || || || || || || ||||| || ||||| || |||||| | ||||| Sbjct 38205 ACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTTTATATTC 38146 Query 288484 TAA 288486 ||| Sbjct 38145 TAA 38143 >seq4549 Length=20005 Score = 114 bits (126), Expect = 3e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || || | ||| | || || ||||| || || || || | Sbjct 19933 CCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAATCAGAT 19874 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || |||||||||||||| ||||| || || || || |||| ||| || || ||||||| Sbjct 19873 AGGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTG---ATCTGGG 19817 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| || || || ||||| || || |||||||| || | ||| | || Sbjct 19816 GGAATACCTTCCTTGTCTTGAATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCG 19757 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || ||||| ||||| || |||| || |||||||| || ||||| Sbjct 19756 ACTTCTAGGGTGATGGTCTTGCCAGTCAATGTTTTGACGAAAATTTGCAT 19707 Score = 89.7 bits (98), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || || | ||| | || || || || ||||| || || | Sbjct 19705 CCACCGCGTAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCAGAC 19646 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | |||||||||||||| ||||| || || || || |||| ||| || || ||||||| Sbjct 19645 AAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTG---ATCTGGG 19589 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| || || || ||||| || || || ||||| |||| ||| | ||| Sbjct 19588 GGAATACCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCGATAGTATCCGATGGTTCA 19529 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| | || || || || || || | || || || || || |||||| Sbjct 19528 ACTTCCAAAGTAATAGTTTTGCCAGTTAATGTTTTTACAAAGATTTGCATT 19478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179290583155138