Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq4549 136 4e-27 seq23389 122 9e-23 seq4550 122 9e-23 seq15038 120 3e-22 seq11312 107 2e-18 seq1380 96.9 3e-15 >seq4549 Length=20005 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| | || || | ||| | ||||| || ||||||||||||||||| | Sbjct 19934 ACCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAATCAGA 19875 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| ||||||| | |||||||| ||| |||| | || ||||| || || || Sbjct 19874 TAGGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGG 19815 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || ||||| ||||| ||| || || | || || | || || Sbjct 19814 AATACCTTCCTTGTCTTGAATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGAC 19755 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | ||||||||| ||||| ||||| |||||||||||||| Sbjct 19754 TTCTAGGGTGATGGTCTTGCCAGTCAATGTTTTGACGAAAATTTGCAT 19707 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | || || | ||| | ||||| || || ||||| |||||||| | Sbjct 19706 ACCACCGCGTAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCAGA 19647 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| ||||||| | |||||||| ||| |||| | || ||||| || || || Sbjct 19646 CAAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGG 19587 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || ||||| ||||| ||| ||| || | ||||| | || || Sbjct 19586 AATACCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCGATAGTATCCGATGGTTCAAC 19527 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||| | ||| | || ||||| || || |||||||| || ||||||||||| Sbjct 19526 TTCCAAAGTAATAGTTTTGCCAGTTAATGTTTTTACAAAGATTTGCATTTT 19476 >seq23389 Length=58516 Score = 122 bits (134), Expect = 9e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || ||||| | ||||| ||||| | || |||||||||||||| || ||||| | Sbjct 44402 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 44461 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | ||||| | ||||| || || |||| | |||||||||||||| ||| Sbjct 44462 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCGGGTGGA 44521 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||| ||||| || || || || |||||| || | || || || || || Sbjct 44522 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCAATAGTGTCCGAGGGTTCGACC 44581 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | ||| | ||||||||| || | |||||||| ||||| ||||| || Sbjct 44582 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 44631 >seq4550 Length=29190 Score = 122 bits (134), Expect = 9e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| | ||| | || ||||| ||||| ||||||||||| | | |||||| | ||||| Sbjct 5497 CACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCATCTTC 5438 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 | |||||| || ||| | || | ||||||||||| |||||||| ||||| || || || Sbjct 5437 CAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTG 5378 Query 64354 TATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCT 64412 | |||||||||| || || | ||||| | || || || | ||| | ||| | Sbjct 5377 GA-TTTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCTACCTCCAAAGTGATGGTTT 5319 Query 64413 TGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||||||||||| || || || |||||||| Sbjct 5318 TGCCGGTCAAAGTCTTAACAAATATTTGCAT 5288 Score = 122 bits (134), Expect = 9e-23 Identities = 154/207 (74%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||| ||||| ||||||||||| | | |||||| | ||||| | ||| Sbjct 5946 TGAAGAGTAGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCATCTTCCAACTGT 5887 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 ||||| ||| | || | ||||||||||| |||||||| ||||| || || || | |||| Sbjct 5886 TTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGA-TTTT 5828 Query 64361 TGCTTTACAACCTCCACTGTA-TCACCGGCG--TCCACTTCTACAGTTACGGTCTTGCCG 64417 |||||| ||| | | || | ||| || |||||||| | ||| | || || || Sbjct 5827 TGCTTT--AACGTTTTCGATAGTGTCCGACGGTTCCACTTCCAAAGTGATCGTTTTTCCA 5770 Query 64418 GTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||||||||| || || ||||||||| Sbjct 5769 GTCAAAGTTTTAACAAATATTTGCATT 5743 Score = 116 bits (128), Expect = 4e-21 Identities = 157/214 (73%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| | ||| | || ||||| ||||| ||||||||||| | | |||||| | ||||| Sbjct 5725 CACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCATCTTC 5666 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 | ||| ||||| ||| | || | ||||||||||| |||||||| ||||| || || || Sbjct 5665 CAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTG 5606 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTA-TCACCGGCG--TCCACTTCTACAGTTACGGT 64410 | |||||||||| ||| | | || | ||| || ||||| || | ||| | || Sbjct 5605 GA-TTTTTGCTTT--AACGTTTTCGATAGTGTCCGACGGTTCCACCTCCAAAGTAATCGT 5549 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || ||||||||||| || || ||||||||| Sbjct 5548 TTTCCCAGTCAAAGTTTTAACAAATATTTGCATT 5515 Score = 102 bits (112), Expect = 8e-17 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || ||||| | | || | ||| | ||||||||||| ||||||||||| || | Sbjct 5287 ACCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGA 5228 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||||| | | ||| | ||| ||||| ||| | || | ||||| || || || || Sbjct 5227 GAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGTTGATCTGGTGG 5168 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 | ||||||||| ||||| ||||| || ||| ||| | ||||| | || || Sbjct 5167 GACTCCTTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAAC 5108 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAATAA 64451 || | || | || || || ||||| || || ||||| || |||||||||| || Sbjct 5107 CTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATTTTAAAAA 5052 >seq15038 Length=36294 Score = 120 bits (132), Expect = 3e-22 Identities = 824/1323 (62%), Gaps = 44/1323 (3%) Strand=Plus/Plus Query 153806 GTTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGCCATGTCAATCAAGTT 153865 |||||| || ||||| || ||||| ||||| |||||||| | ||||||| || ||| Sbjct 4583 GTTAAATGATTGGCTTTGGTCGATAAAAGCTCCGCGATCAACAGCCATGTTGATG--GTT 4640 Query 153866 ---TTTACTGCTCATTTCCCACACAGTTTTGTAGACGGCTTTAATGTCGTCGGGTATGCG 153922 || || | |||||||| || ||||| || | |||| ||| || |||||| Sbjct 4641 GACTTCACCGAA-ATTTCCCAAACTGTTTTATATAATTCTTTTATGCTTTCAGGTATGGC 4699 Query 153923 ATCAATTTTCTGCACACTGCCTCCGGCCGCTATAATGGAATTGCGCATGTGGTCGTCGTA 153982 || || || || | ||| | || | || | || ||||| || | | Sbjct 4700 TTCGATGTTTTGTATTGAGCCGCGATGTGCCAATATTAAGTTTTTCATGTTATCATTCCA 4759 Query 153983 CA-----AATTTAGTCGACATAAATCTTCAACCAAGTGCTGGTTAATTACTTGAAAATCG 154037 | |||| |||| ||||||| || ||| || || || | ||| ||| || Sbjct 4760 AAGGCCCAATTCAGTC-----AAATCTTTAAGCAAATGATGATTGACTACGATAAACTCA 4814 Query 154038 CCGGCCAATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGATTCGTTGTTG 154097 || | || |||||| || || | || || ||||||| || || |||||||| Sbjct 4815 CCAGACAGTACGCGTCGTGTGTAAATGTTTGAAGTATACGGCTCAAAAGACTCGTTGTTA 4874 Query 154098 CCTAATATTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGAGTTTCGCAAA 154157 || | |||||||| |||| || || ||||| || |||| |||||| || |||| Sbjct 4875 CCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAGCTACCAGCAAAGAATTGCGCACT 4934 Query 154158 CCGTGTTTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGTAGG--TTGCA 154215 || || |||| ||| | | | | ||||||||| | ||||| || | Sbjct 4935 CCACACCTTTTAATGTCGTCTTTAAGAGCGGACCAATTCCATAGACCAGTAGGCGTTTTA 4994 Query 154216 CGTTCCACATGTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCACTATAACTAGAGT 154275 | |||||| || ||||| | | ||| ||| | ||||| | ||| | || Sbjct 4995 --TCCCACATATCATATTGAAGGATACCTTTACTAACTGGACTACCTTCATATGTTTCGT 5052 Query 154276 ACGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAGTATACGGTTT 154335 |||| |||| ||||| ||||| || ||||| |||||||| || | || |||| |||| Sbjct 5053 ACGGACCGTATAGTTTGGCCAATTCACAACTAGCTTCTAAGGCACCGTAATATATTGTTT 5112 Query 154336 CGGCAATTTGTTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGCAATCCCAATATAC 154395 | ||||||||| ||||| | || || || |||||||| || | | || || | Sbjct 5113 CAAAAATTTGTTTATTTAAGCGTGCAGCATTTTCGCTTTCGTAGGGATAACGCATTAAAA 5172 Query 154396 AAAAAGCATCGGCGAGCCCTTGAATGCCCACTCCAACGGGTCTGTGTTTTAAATTCGATT 154455 | || || || | ||||| | ||| | |||| || | || ||||| || | Sbjct 5173 TTAGTGCGTCAGCAAATCCTTGGACGCCTAAACCAATTGGACGATGACGAAAATTAGACT 5232 Query 154456 CTTTGGCAGCCTCCAGAGGATAATAATTGATATCGATAATTTTATTTANNNNNNNNNNNN 154515 | ||| || || || || |||||||||||||| ||||| || | Sbjct 5233 TTCTGGTTTCCGGCAATGGGTAGTAATTGATATCGATTATTTTGTTGAGATTCCTTGTTA 5292 Query 154516 NNNNNNNNNNNNNNNNNNNNNATGCGACAAAATCAAACACTCCGCTTTTAATAA--AACG 154573 | | ||||||| | | || | | | ||| Sbjct 5293 TAAGCTTTGCAACTTCTTTGAGTTTGTGAAAATCATATTGTTTATTTGTCGTTACGAAC- 5351 Query 154574 ATTTACACACACA---GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTAC-TGTATT 154629 || | || || || || |||| |||||||| || |||||||||| | || | |||| Sbjct 5352 ATATTCA-ACGCAATTGATGCCAGATTGCAAACTGCTATTTCTTCAGC-CGACGTATATT 5409 Query 154630 GCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATT 154689 || ||||||| || || ||||||||| || ||||| | || | ||||| || Sbjct 5410 CGACGATTTCTGTACATAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGATTACTTT 5469 Query 154690 TGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAA 154749 || |||||| ||||||||||| | ||||| || || || ||||| ||||||| || Sbjct 5470 TGCGGTTGCAAGCGTCTTTGTAAAGCATGTAAGGAGTTCCGGTTTCTACTTGGG---CAC 5526 Query 154750 T-AATTGTGCGAAACAGACTTCGCG-CCTCAACTTGACAAGTAAATCGATTTTCGCTC-- 154805 | || |||||| || | || || || ||| || ||| ||| | ||| Sbjct 5527 TGCATATTGCGAACCATAAGTCACGAGCTTTTATTGTTTTGT---TCGCTTTGCCCTCGT 5583 Query 154806 --TCATATTGTTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGAC 154863 || |||| |||| | | | ||||| | | || | || |||| || || | Sbjct 5584 CTTCGTATTTCACGTATAATCTATCAAATTTGTCTCCATAAATTTCACACAAGCCAGGGC 5643 Query 154864 AGCGGTCGGGACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAAT 154923 | | ||||||||| | ||||| || | | || | |||||| |||| || Sbjct 5644 ATTTATGGGGACACATTAGAGACCAATGCTCATCAGCCTCAACTCTTTTCATGAACAGAT 5703 Query 154924 CCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTC 154983 | || | ||||| ||| || || ||||| || || | || || ||| | ||| Sbjct 5704 CAGGTATCCACAGAGCATAAAATAAATCTCGTGCACGATCCTCCTCTTTACCCGTATTTT 5763 Query 154984 GCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCG 155043 || ||||| | ||| || | || || |||||||| |||||||| |||| || | | Sbjct 5764 TTTTCAAATTTAGAAATTCGAAAATATCTGCGTGCCAAGGCTCTAAGTATATAGCAAAAG 5823 Query 155044 CGCCTTTGCGTTTT---CCTCCTTGATCCACGTGACGCACACAATTATTGTACACGCGCA 155100 | || |||||| || ||||| || || | ||| || ||| ||| ||| |||| Sbjct 5824 CCCCCGGACGTTTTCCACCACCTTGGTCGACATAACGGGCAACATTGTTGAACAGACGCA 5883 Query 155101 ACA 155103 ||| Sbjct 5884 ACA 5886 >seq11312 Length=46762 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || ||||| |||||||| || | | ||||| | ||||| | |||||||| Sbjct 38352 GTCGACTCCTTTTGTATGTTGTAGTCGGATAACGTGCGTCCATCTTCCAATTGCTTGCCA 38293 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||| | || || || || |||||||| |||||||| || || ||||| ||| Sbjct 38292 GCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTG 38233 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || || | || ||||| | ||| | || ||||| || | |||| Sbjct 38232 ACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTT 38173 Query 64427 TTTACGAAAATTTGCATTTTAATA 64450 || ||||||||||||||||| ||| Sbjct 38172 TTAACGAAAATTTGCATTTTTATA 38149 >seq1380 Length=63849 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 115361 GGACTGCACGGTTTTCATGTTCACGAATTCGGCGACACTAGCAACGGCTGCACGTCCGCC 115420 ||| | || ||||||||||||||||||||||| |||| || ||||||||||| || ||| Sbjct 30943 GGATTACATGGTTTTCATGTTCACGAATTCGGGGACAATACTAACGGCTGCACTTCTGCC 31002 Query 115421 GGCGAGCATTTCAACCCGTTTAACCAAGATCACGGCGCACCGAACGCACCCGTCCGCCAC 115480 || | |||||| || || | || |||| ||||| ||||| | | | || || Sbjct 31003 GGTGCGCATTTTAATCCTTGCAATAAAGAGCACGGAGCACCCACTGATAATGAGCGTCAT 31062 Query 115481 GTCGGTGATCTGGGCAACGTCGAATC 115506 |||||||| ||||||| || || || Sbjct 31063 ATCGGTGATTTGGGCAATGTTGAGTC 31088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499494463125240