Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq15038 150 2e-31 seq4550 93.3 4e-14 seq23389 89.7 5e-13 seq11312 87.8 2e-12 seq17808 86.0 6e-12 seq4549 84.2 2e-11 >seq15038 Length=36294 Score = 150 bits (166), Expect = 2e-31 Identities = 616/954 (65%), Gaps = 29/954 (3%) Strand=Plus/Plus Query 152817 TTAAACGATTGGCTCTGATCTATGAAAGCGTTACGGTCGGCCGCCATCTCAATCATGCGT 152876 ||||| |||||||| || || || ||||| || || | ||||| | || | Sbjct 4584 TTAAATGATTGGCTTTGGTCGATAAAAGCTCCGCGATCAACAGCCATGTTGATGGTTGAC 4643 Query 152877 TTTGCCTTCATCTCCCAGGCGGTTTTGTACAAATTTTTAACGCTATCCGGTATACCTTCA 152936 || || || ||||| | ||||| || || | ||| | ||| || ||||| |||| Sbjct 4644 TTCACCGAAATTTCCCAAACTGTTTTATATAATTCTTTTATGCTTTCAGGTATGGCTTCG 4703 Query 152937 ATGTTCTGAATAGAGCCCTTGTGTGCAAAAAT--AGCGTTTCGTATT-TCGGGCGTGTAC 152993 ||||| || || ||||| ||||| || || || |||| | || || | | Sbjct 4704 ATGTTTTGTATTGAGCCGCGATGTGCCAATATTAAGTTTTTCATGTTATCATTCC---AA 4760 Query 152994 ACGTTCAGTTTAATGAGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCC 153053 | | || || | | | || | | ||| | || ||||| || |||||| || | | Sbjct 4761 AGGCCCAATTCAGTCAAATCTTTAAGCAAATGATGATTGACTACGATAAACTCACCAGAC 4820 Query 153054 AACACTCGTCTCAAATATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGT 153113 | || |||| || | || ||| | || ||||| || ||||| || || || Sbjct 4821 AGTACGCGTCGTGTGTAAATGTTTGAAGTATACGGCTCAAAAGACTCGTTGTTACCAAGA 4880 Query 153114 ATTTGAGCCGTGGTTGCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGC 153173 |||||||| || | || || ||||| || |||| ||||||||| |||| || | Sbjct 4881 ATTTGAGCAGTAGACGCCGTAGGCATTGGAGCTACCAGCAAAGAATTGCGCACTCCACAC 4940 Query 153174 GCTCGAATGTCGTCCTTCAACGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCAC 153233 | ||||||||| || | || ||||| ||| || | | || || | |||| Sbjct 4941 CTTTTAATGTCGTCTTTAAGAGCGGACCAATTCCATAGACCAGTAGGCGTTTTATCCCAC 5000 Query 153234 ATGTCGTACTGTAACACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCG 153293 || || || || | | ||| ||| | ||||| || || | || ||| ||| Sbjct 5001 ATATCATATTGAAGGATACCTTTACTAACTGGACTACCTTCATATGTTTCGTACGGACCG 5060 Query 153294 TCGCGTTGGGCCAGTTCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATT 153353 | ||| ||||| ||| || ||||| || | || || || ||||| ||||| ||| Sbjct 5061 TATAGTTTGGCCAATTCACAACTAGCTTCTAAGGCACCGTAATATATTGTTTCAAAAATT 5120 Query 153354 TGTTTATTGAGAACG-GCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGC 153412 |||||||| | | || || || | |||||| ||||| || |||| | | | || Sbjct 5121 TGTTTATTTA-AGCGTGCAGCATTTTCGCTTTCGTAGGGATAACGCATTAAAATTAGTGC 5179 Query 153413 GTCGGCCAGACCCTGGATACCGACGCCGATGGGTCGATGC------TTCTCGTTGCTGCG 153466 ||| || | || |||| || | || || || ||||| || || ||| | Sbjct 5180 GTCAGCAAATCCTTGGACGCCTAAACCAATTGGACGATGACGAAAATTAGACTTTCTG-G 5238 Query 153467 CCTCGCGCTCGCTATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCAC 153526 || || || ||||| |||| |||| |||||| ||||||||||| || | | Sbjct 5239 TTTC-CG---GCAATGGG-TAGTAATTGATATCGATTATTTTGTTGAGATTCCTTGTTAT 5293 Query 153527 CACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATA--GGTCATTTCGTCGACGCGTACG 153584 | || | | | || ||||| | |||||||| | | |||| |||| || || Sbjct 5294 AAGCTTTGCAACTTCTTTGAGTTTGTGAAAATCATATTGTTTATTT-GTCGTTACGAAC- 5351 Query 153585 CATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGC-GTCGCTGTA 153643 || ||||| ||||| || |||||||| || || || | ||||| || | || | || Sbjct 5352 -AT--ATTCAACGCAATTGATGCCAGATTGCAAACTGCTATTTCTTCAGCCGACG-TATA 5407 Query 153644 CTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCT 153703 | ||||| || | || | ||| ||||||||||| ||| | ||| || ||||| || Sbjct 5408 TTCGACGATTTCTGTACATAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGATTACT 5467 Query 153704 TTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTG 153757 |||||| ||||| ||||||||| | |||||||| || ||||| || ||||| Sbjct 5468 TTTGCGGTTGCAAGCGTCTTTGTAAAGCATGTAAGGAGTTCCGGTTTCTACTTG 5521 >seq4550 Length=29190 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||||||| ||||| ||||| | | || || || ||||||||||||||| Sbjct 5286 CCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAG 5227 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || | || | ||||| || | | |||| | ||||||||| || || || Sbjct 5226 AGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGTTGATCTGGTGGG 5167 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCAC 138566 | |||||||| || ||| |||| ||||||| | || | || |||| | ||| || Sbjct 5166 ACTCCTTCTTTATC-TTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAAC 5108 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||||| ||||||| || || || || |||||||| Sbjct 5107 CTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCAT 5060 >seq23389 Length=58516 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||||||||||| || | ||||| | | || || |||||||| || || ||| | Sbjct 44402 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 44461 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || | ||| || || | | || | ||||| ||||| || || Sbjct 44462 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCGGGTGGA 44521 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || |||||||| ||| | || | ||||| | ||| | ||||| | | || || Sbjct 44522 ATTCCCTCTTTGTC-CTGAATCTTGGCTTTTACATTTTCAATAGTGTCCGAGGGTTCGAC 44580 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || || || |||||||||||||||||||| Sbjct 44581 CTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 44628 >seq11312 Length=46762 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/233 (70%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | || || || | | | ||||||||||| |||||||||||| Sbjct 38383 GCCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTGTAGTCG-- 38326 Query 138447 CATAGTACGCGAGTCC----TCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCG 138502 ||| ||| | |||| || | ||| || || | | || | ||| ||||| || | Sbjct 38325 GATA--ACGTGCGTCCATCTTCCAATTGCTTGCCAGCGAAAATCAAACGTTGTTGATCTG 38268 Query 138503 GAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGAC 138561 |||| || |||||||| || ||| |||| | || | | ||| | ||||||| | | Sbjct 38267 GAGGAATGCCTTCTTTATC-CTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGC 38209 Query 138562 TCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || || | || | ||||| ||||| |||||||| || ||||| ||||| Sbjct 38208 TCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCAT 38156 >seq17808 Length=19168 Score = 86.0 bits (94), Expect = 6e-12 Identities = 191/278 (69%), Gaps = 9/278 (3%) Strand=Plus/Minus Query 153483 GGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCC 153542 ||||||| |||| ||||| || ||||||||||| | | | || || | | Sbjct 19168 GGATAGTAATTGACGTCGATTATCTTGTTGAGGTTTCTTGTTATAAGCTTTGTAACTTCT 19109 Query 153543 TTAAGTTTCTCGAAATCATAGGTCATT-TC-GTCGACGCGTACGCATCGATTCACGGCAA 153600 || ||||| | |||||||| || || || | || | || || || ||||| |||| Sbjct 19108 TTCAGTTTGTGAAAATCATAT-TCTTTATCTGCCGTCACGAAC--AT--ATTCAACGCAA 19054 Query 153601 TAGACGCCAGATTACAGACGGCCGTCTCTTCGGC-GTCGCTGTACTGCACGATCTCGGCG 153659 | || |||||||| || || || | || || || | || || | || || || | Sbjct 19053 TTGAGGCCAGATTGCAAACTGCTATTTCATCAGCCGACGAA-TATTCGACAATTTCTGTA 18995 Query 153660 CAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCG 153719 || | ||| || |||||||| ||| | ||| || ||||| ||||||||||| || || Sbjct 18994 CACAAGTTACTACATTTTATAGTGCCAACATTCTGTTGATTACTTTTGCGATTACAAGCA 18935 Query 153720 TCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTG 153757 |||||| | |||||||| || |||||||| ||||| Sbjct 18934 TCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCTACTTG 18897 >seq4549 Length=20005 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | || ||||| | | |||||||||||||||||||| || Sbjct 19933 CCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAATCAGAT 19874 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || | ||| || || | | | || | ||| || || || || || Sbjct 19873 AGGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGA 19814 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| ||||| ||| |||| | || | | ||| | |||||||| | ||| || Sbjct 19813 ATACCTTCCTTGTC-TTGAATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGAC 19755 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || ||||||| ||||| || ||||| ||||| Sbjct 19754 TTCTAGGGTGATGGTCTTGCCAGTCAATGTTTTGACGAAAATTTGCAT 19707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496113080847120