Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq23389 138 8e-28 seq4550 129 4e-25 seq11312 125 5e-24 seq4549 114 9e-21 seq181 100 2e-16 seq1380 84.2 2e-11 >seq23389 Length=58516 Score = 138 bits (152), Expect = 8e-28 Identities = 171/232 (74%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||||||| | | || | ||| | ||| || |||||||| || || |||||| | Sbjct 44402 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCG--G 44459 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| || | ||||| ||||| || |||||| | ||||| ||||| |||||| || Sbjct 44460 ACAATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCGGGTG 44519 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 ||||||| || ||||| ||| ||| ||||||| |||| ||||| || ||| | Sbjct 44520 GAATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCAATAGTGTCCGAGGGTTCGA 44579 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | || | || ||||| || || || || |||||||||||||| |||||||| Sbjct 44580 CCTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 44631 >seq4550 Length=29190 Score = 129 bits (142), Expect = 4e-25 Identities = 158/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCG--T 15022 || || || ||||| ||||| || ||||||||||||||||| || ||| ||| | Sbjct 5955 AACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCC--GACAATGTGCGCCCAT 5898 Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082 |||| || ||||||||||| | ||||||||||| ||||| ||||| |||||||||| Sbjct 5897 CTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGT 5838 Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142 | ||||| ||| || |||| ||||| || ||| || || || || || | Sbjct 5837 CCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCACTTCCAAAGTGATCG 5778 Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||| || |||| |||||| ||||| |||||||| Sbjct 5777 TTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 5744 Score = 127 bits (140), Expect = 1e-24 Identities = 170/235 (72%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| ||||| | |||||| ||||| || || || ||||| || |||||||| ||| | Sbjct 5286 CCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAG 5227 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | | ||| || ||||||||||| | |||||||||||||| || ||| Sbjct 5226 AGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGTTGATCTGGTGGG 5167 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 | |||||| || || |||||| |||| ||| | || ||||||||| || || Sbjct 5166 ACTCCTTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAACC 5107 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184 || ||||| || ||||| || |||| || || || || || ||||| ||| ||| Sbjct 5106 TCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCAT-TTTAAAA 5053 Score = 125 bits (138), Expect = 5e-24 Identities = 160/216 (74%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCG--T 15022 || || ||||| | || || || ||||||||||||||||| || ||| ||| | Sbjct 5499 AACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCC--GACAATGTGCGCCCAT 5442 Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082 |||| || || || ||||| | ||||||||||| ||||| ||||| |||||||||| Sbjct 5441 CTTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGT 5382 Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTAT-TTTCTACGTCTAAGGTAATG 15141 | ||||| ||| || |||| |||||||| | || |||||| || || || ||| Sbjct 5381 CCTGGATTTTTGCTTTAACGTTTTCGATAGTATC-CGATGATTCTACCTCCAAAGTGATG 5323 Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| || |||| ||| || ||||| ||||||||| Sbjct 5322 GTTTTGCCGGTCAAAGTCTTAACAAATATTTGCATA 5287 Score = 123 bits (136), Expect = 2e-23 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCG--T 15022 || || ||||| | || || || ||||||||||||||||| || ||| ||| | Sbjct 5727 AACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCC--GACAATGTGCGCCCAT 5670 Query 15023 CTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGT 15082 |||| || ||||||||||| | ||||||||||| ||||| ||||| |||||||||| Sbjct 5669 CTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGT 5610 Query 15083 CACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGG 15142 | ||||| ||| || |||| ||||| || ||| || || || ||||| | Sbjct 5609 CCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCACCTCCAAAGTAATCG 5550 Query 15143 TTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||| || |||| |||||| ||||| |||||||| Sbjct 5549 TTTTCCCAGTCAAAGTTTTAACAAATATTTGCAT 5516 >seq11312 Length=46762 Score = 125 bits (138), Expect = 5e-24 Identities = 158/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTT 15025 || || || | ||| || || |||||||||||||| ||| || || || | |||| Sbjct 38364 ACCAAGTGCAAGGTCGACTCCTTTTGTATGTTGTAGTCG--GATAACGTGCGTCCATCTT 38307 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 | ||||| ||||||||| | |||||||| ||||| || ||||| ||||| || || Sbjct 38306 CCAATTGCTTGCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCT 38247 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 ||||||| || ||| |||| ||||| ||| | || || || || ||||| |||| Sbjct 38246 GAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTT 38187 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATATTT 15180 | || || |||||||| || ||||||||||| ||| Sbjct 38186 TGCCAGTAAGAGTTTTAACGAAAATTTGCATTTTT 38152 >seq4549 Length=20005 Score = 114 bits (126), Expect = 9e-21 Identities = 171/238 (72%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | | || || ||||| | || || || || || || |||||||| | Sbjct 19705 CCACCGCGTAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCA--G 19648 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || || ||||||| ||||| |||||||| | |||||||| || || || | Sbjct 19647 ACAAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGG 19588 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATT-TTCT 15126 |||| ||||||||||| |||||| || ||| |||| |||||||| | || ||| Sbjct 19587 GAATACCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCGATAGTATC-CGATGGTTCA 19529 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15184 || || || ||||| ||||| || || | ||||||||||| |||||||| ||| ||| Sbjct 19528 ACTTCCAAAGTAATAGTTTTGCCAGTTAATGTTTTTACAAAGATTTGCATTTTTTAAA 19471 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | || || ||||| | || || || ||||| ||||||||||| Sbjct 19933 CCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAATCAGAT 19874 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | ||||||| ||||| |||||||| | |||||||| || || || ||| Sbjct 19873 AGGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGA 19814 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| |||||| || || |||| || || ||| | || || Sbjct 19813 ATACCTTCCTTGTCTTGAATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGACT 19754 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| ||| ||||| || || |||| ||||| || |||||||||||| Sbjct 19753 TCTAGGGTGATGGTCTTGCCAGTCAATGTTTTGACGAAAATTTGCATA 19706 >seq181 Length=60274 Score = 100 bits (110), Expect = 2e-16 Identities = 165/238 (69%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| | || | |||||| ||||| || || || | ||||||||||| || || | Sbjct 37554 CCACCAAGTAAACGTAAAACCAAATGGAGAGTCGAGCCCTTTTGTATGTTATAGTCCATT 37613 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | ||||| | || ||||| ||||| |||||||| |||| | ||| Sbjct 37614 AATGTGCAACCATCTTCCAGCTGCTTGCCGGCGTAAATCAAACGACGTTGATTTGGTGGG 37673 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || || || || | | ||| ||| |||| | |||| ||||||||| | ||| || Sbjct 37674 ATGCCGTCTTTATTCCGAATCTTGGTTTTAATCGTTTCAATAGTATCGGTCGGTTCGACA 37733 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAATAA 15187 ||||| || ||||| || || || | ||||| || ||||| ||||| ||| ||| || Sbjct 37734 TCTAAAGTGATGGTATTTCCCGTTAACGTTTTCACGAAAATCTGCATTTTTCAAAAAA 37791 >seq1380 Length=63849 Score = 84.2 bits (92), Expect = 2e-11 Identities = 132/188 (70%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 90616 TTTGCGTTAATATTTCCTAAATCGCCAACGTGTCGTTCAATGGCATTTGGTGCGCCGTGA 90675 |||| | || ||| || ||||| || | || || ||| | || | ||||| ||||| Sbjct 31091 TTTGACTCAACATTGCCCAAATCACCGATATGACGCTCATTATCAGTGGGTGCTCCGTGC 31032 Query 90676 TCGCGTCCGGTGGGATTAAAATGTTCGCCCGCAGATGTGCAACCGTTAGTTGTGTCACCA 90735 || | ||||||||||| | || ||||| ||||| |||||||| |||| || Sbjct 31031 TCTTTATTGCAAGGATTAAAATGCGCACCGGCAGAAGTGCAGCCGTTAGTATTGTCCCCG 30972 Query 90736 AATTCGTGCACATGAAAACCGTGCAAACCTTTTGGTAA---ATTTAAAATGTATCCAGAA 90792 |||||||| ||||||||||| || || || || | ||| |||| || | ||||| Sbjct 30971 AATTCGTGAACATGAAAACCATGTAATCCCTTAGATAATCCATTT---ATCTCTCCAGTT 30915 Query 90793 ATTTTGAC 90800 | |||||| Sbjct 30914 ACTTTGAC 30907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357287153584235