Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq23389 145 7e-30 seq4550 143 3e-29 seq4549 104 2e-17 >seq23389 Length=58516 Score = 145 bits (160), Expect = 7e-30 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 126883 TGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATC 126942 ||||||||| || || |||| ||| | ||||| || || |||||||||||||| ||||| Sbjct 44398 TGCTCCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATC 44457 Query 126943 GCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGG 127002 | || ||||| ||| || | || ||||||||| | |||||||||||||| ||||| Sbjct 44458 GGACAATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCGGG 44517 Query 127003 AGGTATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCT 127061 || || ||||| |||||| ||| | | || || | | ||| | ||||||| | Sbjct 44518 TGGAATTCCCTCTTTGTCC-TGAATCTTGGCTTTTACATTTTCAATAGTGTCCGAGGGTT 44576 Query 127062 CGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | || | || ||||| || || |||||||||||||||||||| Sbjct 44577 CGACCTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 44628 >seq4550 Length=29190 Score = 143 bits (158), Expect = 3e-29 Identities = 172/230 (75%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||||||||| | |||||||||||||| | || || || ||||| || |||||||| Sbjct 5743 TCCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGA 5684 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||| ||| || | |||||| ||||| ||||||| |||||||| || ||||| Sbjct 5683 CAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 5624 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA--GTTGTTCGACGGTGTCCGTACTCTCG 127063 || || ||||||||| |||||| ||||| | ||| ||||| ||||||| || Sbjct 5623 AATACCTTCCTTGTCCTGGATTTT-TGCTTTAACGTT-TTCGATAGTGTCCGACGGTTCC 5566 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | || | |||||| || |||| |||||| ||||| || ||||| Sbjct 5565 ACCTCCAAAGTAATCGTTTTCCCAGTCAAAGTTTTAACAAATATTTGCAT 5516 Score = 143 bits (158), Expect = 3e-29 Identities = 173/232 (75%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || || ||||| | ||||||||||| || | ||||| || ||||| || |||||||| Sbjct 5973 GCACCTCCGCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCC 5914 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || ||||| ||| || | |||||| ||||| ||||||| |||||||| || ||| Sbjct 5913 GACAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGA 5854 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA--GTTGTTCGACGGTGTCCGTACTCT 127061 || || || ||||||||| |||||| ||||| | ||| ||||| ||||||| | Sbjct 5853 GGAATACCTTCCTTGTCCTGGATTTT-TGCTTTAACGTT-TTCGATAGTGTCCGACGGTT 5796 Query 127062 CGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | ||||| | || | |||||| || |||| |||||| ||||| || ||||| Sbjct 5795 CCACTTCCAAAGTGATCGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 5744 Score = 134 bits (148), Expect = 1e-26 Identities = 170/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | |||||||||||||| | || || || ||||| || |||||||| Sbjct 5515 TCCACCACGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGA 5456 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || ||||| ||| || | ||| |||||||| ||||||| |||||||| || ||||| Sbjct 5455 CAATGTGCGCCCATCTTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 5396 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA--GTTGTTCGACGGTGTCCGTACTCTCG 127063 || || ||||||||| |||||| ||||| | ||| ||||| || |||| || Sbjct 5395 AATACCTTCCTTGTCCTGGATTTT-TGCTTTAACGTT-TTCGATAGTATCCGATGATTCT 5338 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | || | ||||||||||||| ||| || ||||| || ||||| Sbjct 5337 ACCTCCAAAGTGATGGTTTTGCCGGTCAAAGTCTTAACAAATATTTGCAT 5288 >seq4549 Length=20005 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||||| || | |||||||| | || ||||| || |||||||||||||| | Sbjct 19705 CCACCGCGTAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCAGAC 19646 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || | || || ||||| | ||||| || |||||||| || || Sbjct 19645 AAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGA 19586 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || |||||||| ||||| ||| | | ||||| || |||| || ||| Sbjct 19585 ATACCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCGATAGTATCCGATGGTTCAACT 19526 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | |||||||| || | ||||||||||| || ||||| Sbjct 19525 TCCAAAGTAATAGTTTTGCCAGTTAATGTTTTTACAAAGATTTGCAT 19479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475357727753040