Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq4550 136 9e-27 seq11312 116 9e-21 seq23389 109 1e-18 seq4549 95.1 3e-14 seq181 87.8 4e-12 >seq4550 Length=29190 Score = 136 bits (150), Expect = 9e-27 Identities = 153/202 (76%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| ||||| || |||||||| | |||||| || | ||| || | |||||||||| ||| Sbjct 5947 GTGAAGAGTAGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCATCTTCCAACTG 5888 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 || || || ||||| | |||||||||||| ||| ||| ||||| ||||| || || Sbjct 5887 TTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGAT-TT 5829 Query 199546 TTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCG 199604 |||| || ||| ||||| ||||| | | ||| || ||||| |||||||| || || | Sbjct 5828 TTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCACTTCCAAAGTGATCGTTTTTCCAG 5769 Query 199605 TGAGAGTTTTCACAAAAATTTG 199626 | | |||||| ||||| ||||| Sbjct 5768 TCAAAGTTTTAACAAATATTTG 5747 Score = 132 bits (146), Expect = 1e-25 Identities = 148/195 (76%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || |||||||| | |||||| || | ||| || | |||||||||| ||||||||| Sbjct 5484 GTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCATCTTCCAACTGCTTTCCA 5425 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-TT 199551 || ||||| | |||||||||||| ||| ||| ||||| ||||| || |||||| || Sbjct 5424 GCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGAT-TTTTGCTTT 5366 Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 ||| ||||| || || | || |||||| ||||| ||||| || || || || | ||| Sbjct 5365 AACGTTTTCGATAGTATCCGATGATTCTACCTCCAAAGTGATGGTTTTGCCGGTCAAAGT 5306 Query 199612 TTTCACAAAAATTTG 199626 || ||||| ||||| Sbjct 5305 CTTAACAAATATTTG 5291 Score = 123 bits (136), Expect = 6e-23 Identities = 146/195 (75%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || || |||||||| | |||||| || | ||| || | |||||||||| ||| || || Sbjct 5712 GTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCATCTTCCAACTGTTTGCCA 5653 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-TT 199551 || ||||| | |||||||||||| ||| ||| ||||| ||||| || |||||| || Sbjct 5652 GCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGAT-TTTTGCTTT 5594 Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 ||| ||||| ||||| | | ||| || ||||| || ||||| || || || | ||| Sbjct 5593 AACGTTTTCGATAGTGTCCGACGGTTCCACCTCCAAAGTAATCGTTTTCCCAGTCAAAGT 5534 Query 199612 TTTCACAAAAATTTG 199626 ||| ||||| ||||| Sbjct 5533 TTTAACAAATATTTG 5519 >seq11312 Length=46762 Score = 116 bits (128), Expect = 9e-21 Identities = 148/203 (73%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 |||||||||||||| | ||||||||| | || || | ||||||||||| ||||| || Sbjct 38352 GTCGACTCCTTTTGTATGTTGTAGTCGGATAACGTGCGTCCATCTTCCAATTGCTTGCCA 38293 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 ||||| || | ||| || || || ||| ||| |||||| |||||||| || ||| Sbjct 38292 GCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTG 38233 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || ||| | ||||| | | || || ||||| || || || || || || |||||| Sbjct 38232 ACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTT 38173 Query 199613 TTCACAAAAATTTGGTACATTTT 199635 || || |||||||| |||||| Sbjct 38172 TTAACGAAAATTTG---CATTTT 38153 >seq23389 Length=58516 Score = 109 bits (120), Expect = 1e-18 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| ||||| || | || || || ||||| | || || || | ||| || | ||||| Sbjct 44416 CAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGGCCATC 44475 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 ||||| |||||||| ||||| || | ||||||||||| || |||||| ||| || Sbjct 44476 TTCCAATTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCGGGTGGAATTCCCTCTTTGTC 44535 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||||||| || || ||| | ||||| | | ||| || || | ||||| || Sbjct 44536 CTGAATCTTGGCTTTTACATTTTCAATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGT 44595 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| || ||||| |||||||| || Sbjct 44596 CTTGCCCGTTAGGGTTTTTACAAAAATCTG 44625 >seq4549 Length=20005 Score = 95.1 bits (104), Expect = 3e-14 Identities = 143/203 (70%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 ||||||||||| || | ||||| |||| ||| || | ||| ||||||| ||||| || Sbjct 19675 GTCGACTCCTTCTGAATATTGTAATCAGACAAGGTGCGTCCGTCTTCCAATTGCTTGCCA 19616 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || || || | ||| ||||| || || ||| ||||| || ||||| || ||| Sbjct 19615 GCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATTTTAGCCTTA 19556 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 || ||||| || || | || ||| || ||||| || || || || || || | ||| Sbjct 19555 ACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTGCCAGTTAATGTT 19496 Query 199613 TTCACAAAAATTTGGTACATTTT 199635 || ||||| ||||| |||||| Sbjct 19495 TTTACAAAGATTTG---CATTTT 19476 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 |||||||||||||| | |||||| |||| | || | ||| ||||||| ||||| || Sbjct 19903 GTCGACTCCTTTTGAATGTTGTAATCAGATAGGGTGCGTCCGTCTTCCAATTGCTTGCCA 19844 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || || || | ||| ||||| || || ||| ||||| || ||||| || ||| Sbjct 19843 GCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATTTTAGCCTTG 19784 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 ||| ||| | |||||| | | || || || | ||||| ||||| || || | ||| Sbjct 19783 ACGTTTTCAATGGTGTCGGAAGGCTCGACTTCTAGGGTGATGGTCTTGCCAGTCAATGTT 19724 Query 199613 TTCACAAAAATTTG 199626 || || |||||||| Sbjct 19723 TTGACGAAAATTTG 19710 >seq181 Length=60274 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/209 (69%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 ||||||||||| ||||||| | ||| ||||| || || | ||||||||||||||| Sbjct 37578 TGGAGAGTCGAGCCCTTTTGTATGTTATAGTCCATTAATGTGCAACCATCTTCCAGCTGC 37637 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || |||||| | || | ||| | || | || || || ||| | | ||||||| Sbjct 37638 TTGCCGGCGTAAATCAAACGACGTTGATTTGGTGGGATGCCGTCTTTATTCCGAATCTTG 37697 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 || | | ||| | || || || | ||| ||||| || ||||| || || ||||| Sbjct 37698 GTTTTAATCGTTTCAATAGTATCGGTCGGTTCGACATCTAAAGTGATGGTATTTCCCGTT 37757 Query 199607 AGAGTTTTCACAAAAATTTGGTACATTTT 199635 | |||||||| ||||| || |||||| Sbjct 37758 AACGTTTTCACGAAAATCTG---CATTTT 37783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178558009157757