Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq9454 176 5e-39 seq23389 122 9e-23 seq4550 120 3e-22 seq11312 114 1e-20 >seq9454 Length=16677 Score = 176 bits (194), Expect = 5e-39 Identities = 378/563 (67%), Gaps = 24/563 (4%) Strand=Plus/Minus Query 132877 AAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGT 132936 ||||| || ||||| | ||||| || || |||||||| || || | || || | | Sbjct 13557 AAATGTTTAAACATTAGTACCGCAAATTCACAGTGCAAGCCTTCATCACGTGATATCATT 13498 Query 132937 TCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCG 132996 || || ||| || || || ||||| | || ||||| || ||||||||||| | ||| Sbjct 13497 TCATTAGAGAATGTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCG 13438 Query 132997 AAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAAC 133056 || ||||| |||||| | || ||||| || |||||||| | | |||||||| || Sbjct 13437 AAGCTGCCACTAAAGAAAATACCTTCGACAGCAGCGAAAGCTATGATACGCTCGCCAAAA 13378 Query 133057 GTGGC----TTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCA 133112 | || | | || | ||||| || |||||||||||||| | || || | Sbjct 13377 TTAGCCGAATGCGATGAT----ATCCATGCTAGAGCCCATTCGGCCTTCTTCTTAACCAA 13322 Query 133113 CGGCATCGTTTCGATGGCGTTCAACAAA------CGGAGTTTCTCTTCCGAGGAACGCAC 133166 ||||| || || ||||| || || | | || |||||| ||| | | Sbjct 13321 TGGCATTGTCTCAATGGCATTAAAGAGATATTCACGTTCTTTCTCATCCATGATA----- 13267 Query 133167 GTAGGTGTCGATGAGGGTCGA--ATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGA 133224 || || ||||| || | || |||||||||||| || || || |||||||| |||||| Sbjct 13266 -TATGTTTCGATAAG--TAGACTATACATTTCCGAATGCACATTTTCCATGGCAATTTGA 13210 Query 133225 AAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGA 133284 || ||||||||||| || || || | || || ||||| | || || || || | | Sbjct 13209 AAACCGTAAAAGCAACGAGCTTCAGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAA 13150 Query 133285 TTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGG 133344 || || || || || || ||| || || ||||| |||| || || || ||||| Sbjct 13149 TTCTCATTAACAATACCATCGGATGCCGCAAAAAAAGCCAAAACATGTGAAATAAAATGC 13090 Query 133345 CGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCG 133404 || ||| ||| | || || | ||| ||| | |||| || || ||||| ||||| || Sbjct 13089 CGTTCGCCGTCACTTAACCGATTCCAATCGTCCATGTCTTTAGAGAGGTCAACCTCTTCA 13030 Query 133405 ACGGTCCAAAACGACGCCTCGGC 133427 | |||||||| || || || || Sbjct 13029 GCAGTCCAAAAAGAGGCTTCCGC 13007 >seq23389 Length=58516 Score = 122 bits (134), Expect = 9e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38241 aaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || |||||||| || |||||||| |||||||| | || ||||| || Sbjct 44631 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 44572 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | ||| | |||| || || | ||||||||||||||||| ||||| Sbjct 44571 TCGGACACTATTGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 44512 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| | |||| ||| || || || |||| || | ||||| | ||| || Sbjct 44511 CAGCAGCGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCCGATTAT 44452 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || ||||| ||| | || | ||| | |||||||||||| |||| || Sbjct 44451 AATATTCAAAAAGAATCCACCTTACATCTTGTGCTGCGTTTGCGAGGTGG 44402 >seq4550 Length=29190 Score = 120 bits (132), Expect = 3e-22 Identities = 159/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 38243 aaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||||||||| || ||||| | || || ||||| || || | || || || | | Sbjct 5515 AATGCAAATATTTGTTAAAACTTTGACTGGGAAAACGATTACTTTGGAGGTGGAACCGTC 5574 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | ||||| |||||| |||||||| ||||| || || ||||| | |||| Sbjct 5575 GGACACTATCGAAAACG-TTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACC 5633 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | || ||||||||| |||| || | |||||| | || |||| Sbjct 5634 AGCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCGGATTACA 5693 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||| ||||||||| | || ||||||||||| ||||| Sbjct 5694 ACATACAAAAGGAATCCACATTGCATTTGGTGTTGCGT 5731 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||||||||| || || || | || |||||||||||||| | || || || | | Sbjct 5288 ATGCAAATATTTGTTAAGACTTTGACCGGCAAAACCATCACTTTGGAGGTAGAATCATCG 5347 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | ||||| |||||| |||||||| ||||| || || ||||| | ||||| Sbjct 5348 GATACTATCGAAAACG-TTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCA 5406 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | || || || ||| |||| || | |||||| | || ||||| Sbjct 5407 GCAGCGTTTGATCTTTGCTGGAAAGCAGTTGGAAGATGGGCGCACATTGTCGGATTACAA 5466 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| ||||||||| | || ||||||||||| ||||| Sbjct 5467 CATACAAAAGGAATCCACATTGCATTTGGTGTTGCGT 5503 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38241 aaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||||| || || | || || ||||| |||||| | || || ||| | Sbjct 5057 AAAATGCAGATCTTCGTGAAGACATTGACTGGGAAAACTATCACCTTGGAGGTTGAGCCA 5116 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||| | | | | ||||| ||||| | || ||||| ||| | || | || Sbjct 5117 TCCGATACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAAGGAGTCCCACCAGAT 5176 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 |||||||| | || | || ||||||||| |||| | | ||||| ||| ||||||| Sbjct 5177 CAACAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCCGACTAC 5236 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || || ||| |||| || |||||||| | |||||| | || || Sbjct 5237 AACATTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGG 5286 >seq11312 Length=46762 Score = 114 bits (126), Expect = 1e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 38237 TaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGA 38296 || |||||||||||| ||||| ||||| || || |||||||| || || | || || || Sbjct 38149 TATAAAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGA 38208 Query 38297 GGCCACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGC 38356 | | |||||| | ||| | || | ||||| | || ||||| || ||||| | Sbjct 38209 GCCTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCC 38268 Query 38357 CGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGA 38416 || ||||| || | |||| ||| ||||| || |||| || | ||||| | ||| Sbjct 38269 AGATCAACAACGTTTGATTTTCGCTGGCAAGCAATTGGAAGATGGACGCACGTTATCCGA 38328 Query 38417 CTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||| |||||||| |||| |||| ||||| || ||| Sbjct 38329 CTACAACATACAAAAGGAGTCGACCTTGCACTTGGTACTCCGT 38371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500022304256640