Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq15038 100 4e-16 seq14689 96.9 4e-15 seq9454 93.3 5e-14 >seq15038 Length=36294 Score = 100 bits (110), Expect = 4e-16 Identities = 346/535 (65%), Gaps = 25/535 (5%) Strand=Plus/Minus Query 112305 GAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAG 112364 || || || || || || ||||||||||||||||| || |||| || ||||||||| || Sbjct 5515 GAAACCGGAACTCCTTACATGCTTTACAAAGACGCTTGCAACCGCAAAAGTAATCAACAG 5456 Query 112365 AATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAA 112424 ||| | || || || | ||| | |||||||||||| | |||| ||| Sbjct 5455 AATGTTGGCACTATAAAATGCAGTAACTTATGTACAGAAATCGTCGAATATACGTCGGCT 5396 Query 112425 GATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGT--GGATCCAG 112482 || || | || || || || || |||||||| || | | ||||| | | | | Sbjct 5395 GAAGAAATAGCAGTTTGCAATCTGGCATCAATTGCGTT----GAATATGTTCGTAACGAC 5340 Query 112483 AGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACC 112542 | | ||| | || ||||| | | |||||| | |||||| | || | | |||| || | Sbjct 5339 AAATAAACA-ATATGATTTTCACAAACTCAAAGAAGTTGCAAAGCTTATAACAAGGAATC 5281 Query 112543 TAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGA 112602 | |||| | | || |||| |||| ||||| | | | | || |||||| | Sbjct 5280 TCAACAAAATAATCGATATCAATTACTACCCATTGCCGGAAACCAGAAAGTCTAATTTTC 5221 Query 112603 GACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCC 112662 | || |||||||||||| | || |||||||| | || || | | | ||| | Sbjct 5220 GTCATCGTCCAATTGGTTTAGGCGTCCAAGGATTTGCTGACGCACTAATTTT-------A 5168 Query 112663 ACGCATTTGATTCCGACG-AAGCGAA------GGA--AATCAATGCGCGTATATTTGAGA 112713 | || || || || ||| ||||||| | | | ||| | || ||||| | Sbjct 5167 ATGCGTT--ATCCCTACGAAAGCGAAAATGCTGCACGCTTAAATAAACAAATTTTTGAAA 5110 Query 112714 CAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATG 112773 |||| ||| ||| || | || || |||| || ||||| | | | ||||| || | Sbjct 5109 CAATATATTACGGTGCCTTAGAAGCTAGTTGTGAATTGGCCAAACTATACGGTCCGTACG 5050 Query 112774 AAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGA 112828 |||| | ||| ||| ||||| | |||| | ||||||| |||||||||||| Sbjct 5049 AAACATATGAAGGTAGTCCAGTTAGTAAAGGTATCCTTCAATATGATATGTGGGA 4995 >seq14689 Length=1457 Score = 96.9 bits (106), Expect = 4e-15 Identities = 194/282 (69%), Gaps = 8/282 (3%) Strand=Plus/Plus Query 15972 TCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATT--CG 16029 || |||||||||||||| || | |||||||| | ||| ||||| || ||||| || || Sbjct 760 TCGAAACCATCCATCTCAGTAAGGAGCTGGTTCAGAGTCTGTTCGCGCTCATCGTTTCCG 819 Query 16030 C-TGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 16088 | || ||| ||| ||| ||| ||| || | |||||||||||||||||| || ||| Sbjct 820 CCTGCCATCTGACCGTCAC---GTTTCTTACCGATGGCATCAATCTCATCAATAAACACG 876 Query 16089 ATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 16148 || || || ||||| || || |||||| || || || | || |||| Sbjct 877 ATACACGGAGCTTTTTCTTTGGCCTGTTTAAAGAGGTCACGAACCTTCGATGCACCCATG 936 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 16207 || |||||||| |||||||| | | ||| |||| | || || || || || ||||| Sbjct 937 CCGACAAACATTTCCACAAATTCAGAACCGG-ACATGGAGAAAAACGGCACGTTGGATTC 995 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || || | || || || | |||||||| || || || Sbjct 996 TCCGGCTACCGCCTTTGCCAGCATGGTCTTACCTGTTCCGGG 1037 >seq9454 Length=16677 Score = 93.3 bits (102), Expect = 5e-14 Identities = 346/529 (65%), Gaps = 20/529 (4%) Strand=Plus/Plus Query 101816 TTGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTCTAAATGA 101875 |||||||||||||||||| || ||||| || || ||||||||||||| ||| ||| Sbjct 13021 TTGGACTGCTGAAGAGGTTGACCTCTCTAAAGACATGGACGATTGGAATCGGTTAAGTGA 13080 Query 101876 AAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGT 101935 ||| | | || || | | | |||| || ||||| | |||||||| ||||| Sbjct 13081 CGGCGAACGGCATTTTATTTCACATGTTTTGGCTTTTTTTGCGGCATCCGATGGTATTGT 13140 Query 101936 TTTTGAGAATATCAAT--AACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCT 101993 | ||||||| | | | ||| | ||| | | ||||| ||| ||||||| | | Sbjct 13141 TAATGAGAAT-TTAGTGGAACGA-TTTTCCCAAGAGGTTCAAATAACTGAAGCTCGTTGC 13198 Query 101994 TTCTATGCGTATCAA--TGTCATAATGAAATGGTGCATGGGGAGACATACAGTAAACTCA 102051 || || | | |||| || ||| |||| |||||| ||| | || ||| ||| | Sbjct 13199 TTTTACGGTTTTCAAATTGCCAT--GGAAAATGTGCATTCGGAAATGTATAGTCTACTTA 13256 Query 102052 TAGACAAGTATATTAAGGATGGTGCTGAGAA---GAAGCAGCTCTTTGAAGCCATCCAAA 102108 | || | ||||| | ||||| |||| ||| | |||||| | ||||| | | Sbjct 13257 TCGAAACATATATCATGGATG--AGAAAGAACGTGAA-TATCTCTTTAATGCCATTGAGA 13313 Query 102109 CAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTAT-GAAGTGGTTTGATACAAAGTCG 102167 || | |||| || | ||||| || || |||||| | | | | | | || | | ||| Sbjct 13314 CAATGCCATTGGTTAAGAAGAAGGCCGAATGGGCTCTAGCATGGATATCAT-CGCATTCG 13372 Query 102168 CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGT 102227 | |||| ||||| || | || || || ||| || ||||| ||||| ||| Sbjct 13373 GCTAATTTTGGCGAGCGTATCATAGCTTTCGCTGCTGTCGAAGGTATTTTCTTTAGTGGC 13432 Query 102228 TCCTT--CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 102285 ||| || || |||| |||||| ||||| || || | ||||||||| | |||| Sbjct 13433 AGCTTCGCTTCGATATT--TTGGCTAAAGAAACGTGGAATAATGCCAGGTTTAACATTCT 13490 Query 102286 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGT 102334 | || || | || || ||||| || || | ||| || |||||||| Sbjct 13491 CTAATGAAATGATATCACGTGATGAAGGCTTGCACTGTGAATTTGCGGT 13539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620555626371120