Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq14689 105 8e-18 seq17808 82.4 9e-11 >seq14689 Length=1457 Score = 105 bits (116), Expect = 8e-18 Identities = 196/282 (70%), Gaps = 8/282 (3%) Strand=Plus/Plus Query 9279 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CG 9336 || |||||||||||||| || | || ||||| | ||| ||||| || ||||| || || Sbjct 760 TCGAAACCATCCATCTCAGTAAGGAGCTGGTTCAGAGTCTGTTCGCGCTCATCGTTTCCG 819 Query 9337 C-TGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACA 9395 | || ||| ||| ||| ||| ||| || | |||||||||||||||||| || || Sbjct 820 CCTGCCATCTGACCGTCAC---GTTTCTTACCGATGGCATCAATCTCATCAATAAACACG 876 Query 9396 ATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACA 9455 ||||| || ||||| ||| || |||||| || |||||| | || |||| Sbjct 877 ATACACGGAGCTTTTTCTTTGGCCTGTTTAAAGAGGTCACGAACCTTCGATGCACCCATG 936 Query 9456 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 9514 || |||||||| |||||||| | | ||| |||| | || || || || || ||||| Sbjct 937 CCGACAAACATTTCCACAAATTCAGAACCGG-ACATGGAGAAAAACGGCACGTTGGATTC 995 Query 9515 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTgg 9556 || || | || || || | |||||||| || || || Sbjct 996 TCCGGCTACCGCCTTTGCCAGCATGGTCTTACCTGTTCCGGG 1037 >seq17808 Length=19168 Score = 82.4 bits (90), Expect = 9e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522 || ||||| |||| ||||||||| || | ||||| | || || | ||||||| Sbjct 19057 GCAATTGAGGCCAGATTGCAAACTGCTATTTCATCAGCCGACGAATATTCGACAATTTCT 18998 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582 ||||||||||| || || || || || | ||||| ||| ||||| || || || Sbjct 18997 GTACACAAGTTACTACATTTTATAGTGCCAACATTCTGTTGATTACTTTTGCGATTACAA 18938 Query 106583 GCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTC 106617 ||||| ||||| |||||||| || || || ||||| Sbjct 18937 GCATCTTTGTAAAGCATGTAAGGAGTTCCGGTCTC 18903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589803282152040