Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq4550 158 3e-33 seq4549 152 1e-31 seq11312 143 6e-29 seq23389 129 1e-24 seq16703 89.7 1e-12 >seq4550 Length=29190 Score = 158 bits (174), Expect = 3e-33 Identities = 167/220 (76%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | ||| || | ||||||||| || || ||||| || |||||||| | | || | Sbjct 5962 GAGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCCGACAATGTGCG 5903 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 ||||||||| | ||| || || || ||||| | || || |||||||||||||| ||||| Sbjct 5902 CCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTC 5843 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 ||||| || |||||| || ||||| || || |||||||| ||||||||| | || Sbjct 5842 CTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCACTTCCAAAGT 5783 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | ||| ||||| ||||||||||| || || | ||||||| Sbjct 5782 GATCGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCATT 5743 Score = 141 bits (156), Expect = 2e-28 Identities = 150/198 (76%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||| || ||||| || |||||||| | | || | ||||||||| | ||| || || Sbjct 5712 GTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCATCTTCCAACTGTTTGCCA 5653 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || ||||| | || || |||||||||||||| ||||| ||||| || |||||| || Sbjct 5652 GCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATTTTTGCTTTA 5593 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 ||||| || || |||||||| |||||| || | |||| ||| || || ||||||||| Sbjct 5592 ACGTTTTCGATAGTGTCCGACGGTTCCACCTCCAAAGTAATCGTTTTCCCAGTCAAAGTT 5533 Query 195124 TTTACGAACACTTGCATT 195141 || || || | ||||||| Sbjct 5532 TTAACAAATATTTGCATT 5515 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 ||||| || ||||| || |||||||| | | || | ||||||||| | |||||| || Sbjct 5484 GTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCATCTTCCAACTGCTTTCCA 5425 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || ||||| | || || |||||||||||||| ||||| ||||| || |||||| || Sbjct 5424 GCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATTTTTGCTTTA 5365 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 ||||| || || || ||||| ||| || || | || | || || || |||||||| Sbjct 5364 ACGTTTTCGATAGTATCCGATGATTCTACCTCCAAAGTGATGGTTTTGCCGGTCAAAGTC 5305 Query 195124 TTTACGAACACTTGCAT 195140 || || || | |||||| Sbjct 5304 TTAACAAATATTTGCAT 5288 Score = 107 bits (118), Expect = 4e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 ||||| | || || || || ||||| ||||| ||||| |||| || || | |||| | Sbjct 5271 AAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATTT 5212 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 || | ||| || || || ||||| | || ||||| ||||| || | |||||||| ||| Sbjct 5211 TCCAACTGTTTGCCAGCAAAGATCAAACGCTGTTGATCTGGTGGGACTCCTTCTTTATCT 5152 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108 |||||||| || || |||||||| || || || || || || | ||| | || Sbjct 5151 TGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATAGTT 5092 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 || || ||||| || || ||||| | ||||||| Sbjct 5091 TTCCCAGTCAATGTCTTCACGAAGATCTGCATTT 5058 >seq4549 Length=20005 Score = 152 bits (168), Expect = 1e-31 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||| |||||||| |||||||| | || || | || ||||| | ||||| || Sbjct 19903 GTCGACTCCTTTTGAATGTTGTAATCAGATAGGGTGCGTCCGTCTTCCAATTGCTTGCCA 19844 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || || || | ||||| || ||||| ||||| ||||| |||||||||||||| |||| Sbjct 19843 GCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATTTTAGCCTTG 19784 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 ||||| ||||||||||| ||| || ||||| ||||| | ||||| || ||||| ||| Sbjct 19783 ACGTTTTCAATGGTGTCGGAAGGCTCGACTTCTAGGGTGATGGTCTTGCCAGTCAATGTT 19724 Query 195124 TTTACGAACACTTGCAT 195140 || ||||| | |||||| Sbjct 19723 TTGACGAAAATTTGCAT 19707 Score = 123 bits (136), Expect = 6e-23 Identities = 149/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 || ||||| || |||||||||||||| | |||| || | || ||||| | ||||| || Sbjct 19675 GTCGACTCCTTCTGAATATTGTAATCAGACAAG-GTGCGTCCGTCTTCCAATTGCTTGCC 19617 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062 || || || | ||||| || ||||| ||||| ||||| |||||||||||||| ||| Sbjct 19616 AGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATTTTAGCCTT 19557 Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122 || || || || || ||||| ||| ||||| | |||| || || || || || || Sbjct 19556 AACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTGCCAGTTAATGT 19497 Query 195123 TTTTACGAACACTTGCATTT 195142 |||||| || | |||||||| Sbjct 19496 TTTTACAAAGATTTGCATTT 19477 >seq11312 Length=46762 Score = 143 bits (158), Expect = 6e-29 Identities = 151/199 (76%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || ||||| ||||| || ||||| |||| | || | |||||||| | ||||| || Sbjct 38352 GTCGACTCCTTTTGTATGTTGTAGTCGGATAACGTGCGTCCATCTTCCAATTGCTTGCCA 38293 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 ||||| || | |||||||| |||||||||||||||||||| || |||||||| |||| Sbjct 38292 GCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTG 38233 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || ||||| ||||| ||| || ||||| | |||| || || || || | |||| Sbjct 38232 ACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTT 38173 Query 195124 TTTACGAACACTTGCATTT 195142 || ||||| | |||||||| Sbjct 38172 TTAACGAAAATTTGCATTT 38154 >seq23389 Length=58516 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || | ||||| |||||||||||||| ||||||| | || | |||||||| Sbjct 44420 ACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGGCCATCTTCC 44479 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | ||||| || ||||| || | ||| || ||||| || ||||| || |||||||| ||| Sbjct 44480 AATTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCGGGTGGAATTCCCTCTTTGTCCTGA 44539 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || || || || ||||| |||||||| ||| || ||||| || | ||||| Sbjct 44540 ATCTTGGCTTTTACATTTTCAATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGTCTTG 44599 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | |||||||| || | ||||| Sbjct 44600 CCCGTTAGGGTTTTTACAAAAATCTGCAT 44628 >seq16703 Length=4054 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||| |||||||| | |||||| || |||| ||||| | ||||||| | ||| Sbjct 2211 TGAAGAGTAGACTCTTTCTCAATATTATATTCGGAGAGAGTACGGTCATCTTCCAATTGC 2270 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || | || || | | || |||||| ||||||| |||||||||||| ||||||| Sbjct 2271 TTGCCATCAAATATCAAACACTGCTGGTCTAGAGGAATAACTTCTTTGTCTTCAATTTTT 2330 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAA 195084 |||| || | | |||||| ||| Sbjct 2331 GCTTTGATGTATTTCACGGTGTCAGAA 2357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109139425126457