Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020
14-03-12] 24,071 sequences; 363,107,242 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq4550 158 3e-33
seq4549 152 1e-31
seq11312 143 6e-29
seq23389 129 1e-24
seq16703 89.7 1e-12
>seq4550
Length=29190
Score = 158 bits (174), Expect = 3e-33
Identities = 167/220 (76%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981
||| | ||| || | ||||||||| || || ||||| || |||||||| | | || |
Sbjct 5962 GAGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCCGACAATGTGCG 5903
Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041
||||||||| | ||| || || || ||||| | || || |||||||||||||| |||||
Sbjct 5902 CCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTC 5843
Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101
||||| || |||||| || ||||| || || |||||||| ||||||||| | ||
Sbjct 5842 CTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCACTTCCAAAGT 5783
Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141
| ||| ||||| ||||||||||| || || | |||||||
Sbjct 5782 GATCGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCATT 5743
Score = 141 bits (156), Expect = 2e-28
Identities = 150/198 (76%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003
||||| || ||||| || |||||||| | | || | ||||||||| | ||| || ||
Sbjct 5712 GTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCATCTTCCAACTGTTTGCCA 5653
Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063
|| ||||| | || || |||||||||||||| ||||| ||||| || |||||| ||
Sbjct 5652 GCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATTTTTGCTTTA 5593
Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123
||||| || || |||||||| |||||| || | |||| ||| || || |||||||||
Sbjct 5592 ACGTTTTCGATAGTGTCCGACGGTTCCACCTCCAAAGTAATCGTTTTCCCAGTCAAAGTT 5533
Query 195124 TTTACGAACACTTGCATT 195141
|| || || | |||||||
Sbjct 5532 TTAACAAATATTTGCATT 5515
Score = 122 bits (134), Expect = 2e-22
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003
||||| || ||||| || |||||||| | | || | ||||||||| | |||||| ||
Sbjct 5484 GTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCATCTTCCAACTGCTTTCCA 5425
Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063
|| ||||| | || || |||||||||||||| ||||| ||||| || |||||| ||
Sbjct 5424 GCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATTTTTGCTTTA 5365
Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123
||||| || || || ||||| ||| || || | || | || || || ||||||||
Sbjct 5364 ACGTTTTCGATAGTATCCGATGATTCTACCTCCAAAGTGATGGTTTTGCCGGTCAAAGTC 5305
Query 195124 TTTACGAACACTTGCAT 195140
|| || || | ||||||
Sbjct 5304 TTAACAAATATTTGCAT 5288
Score = 107 bits (118), Expect = 4e-18
Identities = 152/214 (71%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988
||||| | || || || || ||||| ||||| ||||| |||| || || | |||| |
Sbjct 5271 AAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATTT 5212
Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048
|| | ||| || || || ||||| | || ||||| ||||| || | |||||||| |||
Sbjct 5211 TCCAACTGTTTGCCAGCAAAGATCAAACGCTGTTGATCTGGTGGGACTCCTTCTTTATCT 5152
Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC 195108
|||||||| || || |||||||| || || || || || || | ||| | ||
Sbjct 5151 TGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTGATAGTT 5092
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142
|| || ||||| || || ||||| | |||||||
Sbjct 5091 TTCCCAGTCAATGTCTTCACGAAGATCTGCATTT 5058
>seq4549
Length=20005
Score = 152 bits (168), Expect = 1e-31
Identities = 152/197 (77%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003
|| ||||| |||||||| |||||||| | || || | || ||||| | ||||| ||
Sbjct 19903 GTCGACTCCTTTTGAATGTTGTAATCAGATAGGGTGCGTCCGTCTTCCAATTGCTTGCCA 19844
Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063
|| || || | ||||| || ||||| ||||| ||||| |||||||||||||| ||||
Sbjct 19843 GCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATTTTAGCCTTG 19784
Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123
||||| ||||||||||| ||| || ||||| ||||| | ||||| || ||||| |||
Sbjct 19783 ACGTTTTCAATGGTGTCGGAAGGCTCGACTTCTAGGGTGATGGTCTTGCCAGTCAATGTT 19724
Query 195124 TTTACGAACACTTGCAT 195140
|| ||||| | ||||||
Sbjct 19723 TTGACGAAAATTTGCAT 19707
Score = 123 bits (136), Expect = 6e-23
Identities = 149/200 (75%), Gaps = 2/200 (1%)
Strand=Plus/Minus
Query 194944 GTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002
|| ||||| || |||||||||||||| | |||| || | || ||||| | ||||| ||
Sbjct 19675 GTCGACTCCTTCTGAATATTGTAATCAGACAAG-GTGCGTCCGTCTTCCAATTGCTTGCC 19617
Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTT 195062
|| || || | ||||| || ||||| ||||| ||||| |||||||||||||| |||
Sbjct 19616 AGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGAATTTTAGCCTT 19557
Query 195063 GACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGT 195122
|| || || || || ||||| ||| ||||| | |||| || || || || || ||
Sbjct 19556 AACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTGCCAGTTAATGT 19497
Query 195123 TTTTACGAACACTTGCATTT 195142
|||||| || | ||||||||
Sbjct 19496 TTTTACAAAGATTTGCATTT 19477
>seq11312
Length=46762
Score = 143 bits (158), Expect = 6e-29
Identities = 151/199 (76%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003
|| ||||| ||||| || ||||| |||| | || | |||||||| | ||||| ||
Sbjct 38352 GTCGACTCCTTTTGTATGTTGTAGTCGGATAACGTGCGTCCATCTTCCAATTGCTTGCCA 38293
Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063
||||| || | |||||||| |||||||||||||||||||| || |||||||| ||||
Sbjct 38292 GCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTG 38233
Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123
|| || ||||| ||||| ||| || ||||| | |||| || || || || | ||||
Sbjct 38232 ACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTT 38173
Query 195124 TTTACGAACACTTGCATTT 195142
|| ||||| | ||||||||
Sbjct 38172 TTAACGAAAATTTGCATTT 38154
>seq23389
Length=58516
Score = 129 bits (142), Expect = 1e-24
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
||||| || | ||||| |||||||||||||| ||||||| | || | ||||||||
Sbjct 44420 ACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGGCCATCTTCC 44479
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
| ||||| || ||||| || | ||| || ||||| || ||||| || |||||||| |||
Sbjct 44480 AATTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCGGGTGGAATTCCCTCTTTGTCCTGA 44539
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || || || || ||||| |||||||| ||| || ||||| || | |||||
Sbjct 44540 ATCTTGGCTTTTACATTTTCAATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGTCTTG 44599
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | |||||||| || | |||||
Sbjct 44600 CCCGTTAGGGTTTTTACAAAAATCTGCAT 44628
>seq16703
Length=4054
Score = 89.7 bits (98), Expect = 1e-12
Identities = 108/147 (73%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997
|||||||| |||||||| | |||||| || |||| ||||| | ||||||| | |||
Sbjct 2211 TGAAGAGTAGACTCTTTCTCAATATTATATTCGGAGAGAGTACGGTCATCTTCCAATTGC 2270
Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057
|| || | || || | | || |||||| ||||||| |||||||||||| |||||||
Sbjct 2271 TTGCCATCAAATATCAAACACTGCTGGTCTAGAGGAATAACTTCTTTGTCTTCAATTTTT 2330
Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAA 195084
|||| || | | |||||| |||
Sbjct 2331 GCTTTGATGTATTTCACGGTGTCAGAA 2357
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109139425126457
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |