Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq15038 416 3e-111 seq9454 316 2e-81 seq17808 228 9e-55 >seq15038 Length=36294 Score = 416 bits (460), Expect = 3e-111 Identities = 1220/1880 (65%), Gaps = 28/1880 (1%) Strand=Plus/Plus Query 46973 TTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032 ||| || || ||||||| || ||||| |||| || |||| || ||||||||||| Sbjct 4448 TTTATCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGGTAATACATACC 4507 Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092 || ||||| || |||| ||||| ||||| ||| || ||||||| ||||||||| Sbjct 4508 GGTTTTTAAGCCGGCTTTCCAACCATAAAAATGTATAGAAGATAATTTACCATAACTAGG 4567 Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152 ||| | | || || |||| ||||| || || || ||||| || || | |||| | || Sbjct 4568 TTCAGCTACGTGTATGTTAAATGATTGGCTTTGGTCGATAAAAGCTCCGCGATCAACAGC 4627 Query 47153 CATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTC 47212 ||| | | | | | | || ||||| ||||||||||| | || ||| ||| Sbjct 4628 CATGTTGATGGTTGACTTCACCGAAATTTCCCAAACTGTTTTATATAATTCTTTTATGCT 4687 Query 47213 TTCTGGGA--GATTAG-TATTTTGAATAGATCCTCCgttttctataattttgttttttaa 47269 ||| || | | || | | ||||| || || || | | | | | ||| |||||| | Sbjct 4688 TTCAGGTATGGCTTCGATGTTTTGTATTGAGCCGCGATGTGCCAATATTAAGTTTTTCAT 4747 Query 47270 ttcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAATTTG 47329 | || |||||| |||||| || ||| | | |||| |||| || | Sbjct 4748 GTTATCATTCCAAAGGCCCAATTCAGTCAAATCTTTAAGCAAATGATGATTGACTACGAT 4807 Query 47330 AAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGATTC 47389 ||| || ||||| ||||| | || | || || || ||||| || || | ||| || Sbjct 4808 AAACTCACCAGACAGTACGCGTCGTGTGTAAATGTTTGAAGTATACGGCTCAAAAGACTC 4867 Query 47390 ATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATT 47449 || || |||| |||||||||||| || || |||||||| | || || | || ||| Sbjct 4868 GTTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAGCTACCAGCAAAGAATT 4927 Query 47450 TCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGATGG 47509 | |||||| | ||| || | ||||| ||| ||| | | || Sbjct 4928 GCGCACTCCACACCTTTTAATGTCGTCTTTAAGAGCGGACCAATTCCATAGACCAGTAGG 4987 Query 47510 AACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATGT 47569 || ||| | |||||||||||| || |||||||| | ||| ||| | |||||| Sbjct 4988 CGTTTTATCCCACATATCATATTGAAGGATACCTTTACTAACTGGACTACCTTCATATGT 5047 Query 47570 TTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATATAT 47629 || || |||||||||||||| || | ||||||||| ||||| || |||| |||||||| Sbjct 5048 TTCGTACGGACCGTATAGTTTGGCCAATTCACAACTAGCTTCTAAGGCACCGTAATATAT 5107 Query 47630 TGTTTCAAATATTTTTATGTTT-AGATTCCTTGCTTCTGATGATTCAAAAGGATANNNNN 47688 ||||||||| |||| | | ||| || | | || | | ||| | ||||| Sbjct 5108 TGTTTCAAAAATTTGTTTATTTAAGCGTGC-AGCATTTTCGCTTTCGTAGGGATAACGCA 5166 Query 47689 NNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTAT 47748 | || || || |||||||| || || | ||||||||| | |||| || Sbjct 5167 TTAAAATTAGTGCGTCAGCAAATCCTTGGACGCCTAAACCAATTGGACGATGACGAAAAT 5226 Query 47749 TAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNNN 47808 |||| | ||| || ||||| || | || ||||| || ||||| || ||| Sbjct 5227 TAGACTTTCTGGTTTCCGGCAATGGGTAGTAATTGATATCGATTATTTTGTTGAGATTCC 5286 Query 47809 NNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAACTTGTTATTT---ATAA 47865 ||| |||| | | ||| | ||||||| | | |||||| | | Sbjct 5287 TTGTTATAAGCTTTGCAACTTCTTTGAGTTTGTGAAAATCATATTGTTTATTTGTCGTTA 5346 Query 47866 CAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTAT 47925 | ||| |||| | || || ||||| ||||| || || |||| || | | |||| Sbjct 5347 CGAACATATTCAACGCAATTGATGCCAGATTGCAAACTGCTATTTCTTCAGCCGACGTAT 5406 Query 47926 ATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTAT 47985 ||| | ||||| | ||||| |||| ||||| ||||| || | ||| || |||||| Sbjct 5407 ATTCGACGATTTCTGTACATAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGATTAC 5466 Query 47986 TNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATT 48045 | ||| || ||||| ||||||||||| |||| ||||| ||||||| || | Sbjct 5467 TTTTGCGGTTGCAAGCGTCTTTGTAAAGCATGTAAGGAGTTCCGGTTTCTACTTGGG--- 5523 Query 48046 CAATGATAGATTTCCAAAC---AGTC-CTAGCCTTTATAACAGCTCTAGCTTTATTATCA 48101 || || | ||| | || | |||| | ||| ||||| | ||||| || Sbjct 5524 CACTG-CATATTGCGAACCATAAGTCACGAGCTTTTATTGTTTTGTTCGCTTTGCCCTCG 5582 Query 48102 TGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGA 48161 | ||||||||| ||||| | ||||||| || ||||| | | | || ||||| Sbjct 5583 TCTTCGTATTTCACGTATAATCTATCAAATTTGTCTCCATAAATTTCACACAAGCCAGGG 5642 Query 48162 CATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATA 48221 |||| || |||||||| | ||||||| ||||||| | ||||| |||| || | | Sbjct 5643 CATTTATGGGGACACATTAGAGACCAATGCTCATCAGCCTCAACTCTTTTCATGAACAGA 5702 Query 48222 TCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTC 48281 || |||||||| ||||| ||||||||| | | | || || || || |||| Sbjct 5703 TCAGGTATCCACAGAGCATAAAATAAATCTCGTGCACGATCCTCCTCTTTACCCGTATTT 5762 Query 48282 CTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATT 48341 |||| | | ||||| || | ||||| || ||||| || ||||| ||||| || | Sbjct 5763 TTTTTCAAATTTAGAAATTCGAAAATATCTGCGTGCCAAGGCTCTAAGTATATAGCAAAA 5822 Query 48342 ACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTT 48401 | || || ||||| ||| ||||| || | ||| | |||| |||||| | | | Sbjct 5823 GCCCCCGGACGTTTTCCACCACCTTGGTCGACATAACGGGCAACATTGTTGAACAGACGC 5882 Query 48402 AACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCT 48461 ||||| || |||| ||| | |||| || | | | || | | | | || | ||| Sbjct 5883 AACATAGGAACAAGACCGTCAGATACGTCACTATTACAAGATGTCTTAGTCCCTTTTGCT 5942 Query 48462 CTTAT---ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACA- 48517 | ||| || | || || | |||||| ||||| ||| ||||| ||| |||||| Sbjct 5943 CGTATGCAATGAATATTT---AGACCTATTCCACCGGCCGACTTAGAAATTTTAGCACAT 5999 Query 48518 CCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACA 48577 || || | |||| ||| || || || || || |||| ||| | || || Sbjct 6000 TGGTCTACAGCCTTCAT-AATACCATCAATGGAGTCTTCCGGCATAGTTAGCAAGAAGCA 6058 Query 48578 ACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAA 48637 |||| ||| ||| | || | | | |||||| ||||| || |||||| |||| Sbjct 6059 GGACGACAATTGTGGACGTATGGTAGCAGCACCAAATAAAGTTGGGGAAGCATGAGTAAA 6118 Query 48638 CCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTG--ATGT 48695 | ||| || | | ||||| ||||||||| | | || || | ||| | || Sbjct 6119 GTAACCCTCCGACATGAGATTATAAGTTTCAATAGCCGCTTCAATGT--CATCGCCGTGA 6176 Query 48696 ATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATT 48755 || || |||| |||||||||||||||| ||| || | || ||||||||| || || Sbjct 6177 ATGCCAATAGCGACACGCATTAACATATGTTGTGGCCGCTCCACAATTTTGCCGTTAATC 6236 Query 48756 TTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTA 48815 || || | ||| ||| ||| || |||||||| |||||| | || || ||| ||| | Sbjct 6237 TTTAATAAATAAGATCGTTCTAAAGTTTTAAAGCCAAAAAAATTATAACTAAAATCGCGA 6296 Query 48816 TCATTAATAATTGATGAATT 48835 |||| |||||| | ||||| Sbjct 6297 TCATAAATAATAGCAGAATT 6316 >seq9454 Length=16677 Score = 316 bits (350), Expect = 2e-81 Identities = 502/717 (70%), Gaps = 2/717 (0%) Strand=Plus/Minus Query 18778 AATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTC 18837 ||||||||||| | | ||| || ||| ||| |||||| | ||| | |||| ||| Sbjct 13722 AATTCTAATAGCAAACGATCGGCAACATATTCTATATATTTACACATACTTTCACTGTTC 13663 Query 18838 ATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCC 18897 || || ||||| | || |||| || ||||| | ||| |||| ||| || ||||| || Sbjct 13662 ATGCCAATTAAGTCGACTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTTACGGCA 13603 Query 18898 TCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATC 18957 || | ||| || | || | |||| | | || | || | |||||||||||| Sbjct 13602 TCAGTTATTATTTCCAAAATCCGTTCTTTACTCGGTTTTTGTATTAAATGTTTAAACATT 13543 Query 18958 AAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTT 19017 | ||||| ||||| || | || || || | ||||| ||||||||| |||||| Sbjct 13542 AGTACCGCAAATTCACAGTGCAAGCCTTCATCACGTGATATCATTTCATTAGAGAATGTT 13483 Query 19018 AAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAG 19077 ||||| ||||| | ||| | ||| |||| ||| ||||| ||||| || ||| |||| Sbjct 13482 AAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTGCCACTAAAG 13423 Query 19078 AATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTA 19137 || |||||||| || || || ||||| | | | || ||| || |||| || | Sbjct 13422 AAAATACCTTCGACAGCAGCGAAAGCTATGATACGCTCGCCAAAATTAGCCGAATGCG-A 13364 Query 19138 TGA-ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGA 19196 ||| |||||| || ||||| || |||||||| || || ||||||||||||| || | Sbjct 13363 TGATATCCATGCTAGAGCCCATTCGGCCTTCTTCTTAACCAATGGCATTGTCTCAATGGC 13304 Query 19197 ATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTA 19256 |||||| ||||| ||| || | ||| | | ||||| || || | || ||| || Sbjct 13303 ATTAAAGAGATATTCACGTTCTTTCTCATCCATGATATATGTTTCGATAAGTAGACTATA 13244 Query 19257 CATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGT 19316 |||||| ||||| | |||||| || || || ||||| |||||||| || | ||||| || Sbjct 13243 CATTTCCGAATGCACATTTTCCATGGCAATTTGAAAACCGTAAAAGCAACGAGCTTCAGT 13184 Query 19317 TATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGC 19376 ||| || || || |||||| ||| || ||||| |||||||| || ||||| || Sbjct 13183 TATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGC 13124 Query 19377 TGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCA 19436 |||||||| || || |||||| ||||||||| ||| | |||| |||||| Sbjct 13123 CGCAAAAAAAGCCAAAACATGTGAAATAAAATGCCGTTCGCCGTCACTTAACCGATTCCA 13064 Query 19437 ATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493 ||| | || |||||||| | || || |||||| | ||||||||||| || || || Sbjct 13063 ATCGTCCATGTCTTTAGAGAGGTCAACCTCTTCAGCAGTCCAAAAAGAGGCTTCCGC 13007 >seq17808 Length=19168 Score = 228 bits (252), Expect = 9e-55 Identities = 673/1026 (66%), Gaps = 27/1026 (3%) Strand=Plus/Minus Query 47825 AATTTCTCTTAATTTATTAAAATCAAACTTGTTATTTA---TAACAAACCTATTAAGTGC 47881 || |||| | | ||| | ||||||| | | |||| | | || ||| |||| | || Sbjct 19115 AACTTCTTTCAGTTTGTGAAAATCATATTCTTTATCTGCCGTCACGAACATATTCAACGC 19056 Query 47882 TATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGC 47941 || || || ||||| || || |||| |||| | | ||||| | ||||| | Sbjct 19055 AATTGAGGCCAGATTGCAAACTGCTATTTCATCAGCCGACGAATATTCGACAATTTCTGT 18996 Query 47942 ACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGC 48001 ||| | |||| |||||| ||||| || | ||| || |||||| | ||||| || Sbjct 18995 ACACAAGTTACTACATTTTATAGTGCCAACATTCTGTTGATTACTTTTGCGATTACAAGC 18936 Query 48002 GTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCA 48061 || ||||||||||| |||| ||||| || |||| || | | || | ||| | | Sbjct 18935 ATCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCTACTTGGG---CGCTGC-ATATTGCGA 18880 Query 48062 AACA---GTC-CTAGCCTTTATAACAGCTCTA---GCTTTATTATCATGTTCGTATTTAG 48114 | || ||| | ||| | ||| | | || |||||| || | ||| ||||| Sbjct 18879 ACCACAAGTCACGAGCTTGTATT---GTTTTATTCGCTTTACCCTCGTCTTCATATTTTA 18823 Query 48115 TATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGAC 48174 |||| || || ||||||| || ||||| || | || || ||||| |||| || || | Sbjct 18822 TATACAATTTATCAAATTTGTCTCCATAAACTTCTTCCAAGCCAGGGCATTTATGGGGGC 18763 Query 48175 ACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAA 48234 |||| | ||||||| ||||||| | |||||| |||| |||| |||||||||||| | Sbjct 18762 ACATTAGAGACCAATGCTCATCAGCCTCTACTCTTTTCATGAATAAATCTGGTATCCACA 18703 Query 48235 GAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTT-AAGTTCA 48293 | || ||||||||||| | | ||| || || || ||||| |||| ||||| | Sbjct 18702 GTGCATAAAATAAATCCCGTGCACGGTCTTCCTCCTTTCCCGTATTCTTTTTCAAGTTTA 18643 Query 48294 AGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGT 48353 |||| || | ||||| || ||||| |||||||||||||| || | | || || ||| Sbjct 18642 -GAAATTCGAAAATATCTGCGTGCCAAGGTTCTAAATATATAGCGAAAGCCCCCGGACGT 18584 Query 48354 TTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACA 48413 || ||| ||||| |||| ||| | |||| |||||| ||| | ||||| || ||| Sbjct 18583 TTCCCACCACCTTGGTCTACATAACGGGCAACATTGTTGAAAAGACGCAACATAGGAACA 18524 Query 48414 ATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTAT---ATTA 48470 | |||| || | ||| || || || | | || | ||| ||| || Sbjct 18523 AGTCCATCGGACACGTCATCAACACCTGATATCTTCGTCCCCTTTACTCGTATGCAATGG 18464 Query 48471 CTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTA 48530 || || | ||||| ||||| ||| ||||| ||| |||||| | | | || Sbjct 18463 ATATTT---AGGCCTATTCCACCGGCCGACTTAGAAATTTTAGCACATTGGTCCACGGCC 18407 Query 48531 TCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGC 48590 | |||| || | || || || ||| | | || ||||| |||| ||| Sbjct 18406 TTCAAAATACCATGAATGGAGTCTTCCGGCATCGTAAGTAAGAAACAGGATGACAATTGT 18347 Query 48591 GGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGAT 48650 ||| | || | | | |||||| ||||| || ||||| | || | ||| || Sbjct 18346 GGACGTATTGTAGCAGCACCAAATAAAGTTGGGGAAGCATGTGTGAAGTAACGCTCCGAC 18287 Query 48651 AACAATTTATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATAC 48709 | | ||||| ||||||||| | | || || || || | || || || || | || Sbjct 18286 ATGAGGTTATAAGTTTCAATAGCGGCCTCAATGTCGTCACCG-TGAATGCCAATGGCGAC 18228 Query 48710 ACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGA 48769 |||||| ||||||| || |||| || |||||||| ||| || || || | ||| || Sbjct 18227 ACGCATCAACATATGCTGTGGTCGCTCCACAATTTTTCCATTAATCTTTAACAAATAAGA 18168 Query 48770 TTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTGA 48829 ||| || ||||| || |||||| | ||||| ||| ||| ||||| |||||| | Sbjct 18167 CCGTTCTAAAGTTTTGAAGCCAAAAAAATTGTAACTAAAATCGCGATCATAAATAATGGC 18108 Query 48830 TGAATT 48835 ||||| Sbjct 18107 CGAATT 18102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561939668488440