Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq9454 271 9e-68 seq21866 104 3e-17 seq6733 104 3e-17 seq864 104 3e-17 >seq9454 Length=16677 Score = 271 bits (300), Expect = 9e-68 Identities = 473/688 (69%), Gaps = 0/688 (0%) Strand=Plus/Minus Query 37010 ATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTAGTTTTAC 37069 ||| |||||| ||||||| ||||||||||| |||| ||| || ||||||| | || Sbjct 13705 ATCGGCAACATATTCTATATATTTACACATACTTTCACTGTTCATGCCAATTAAGTCGAC 13646 Query 37070 TGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAACTATATTAAC 37129 ||| | || ||| | ||| |||||| ||| |||| ||||| | | ||| | | Sbjct 13645 TGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTTACGGCATCAGTTATTATTTCCAA 13586 Query 37130 AATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAATAAACATGCAAAATCACA 37189 ||| ||||| | | || | | |||||| |||||||| || ||||| ||||| Sbjct 13585 AATCCGTTCTTTACTCGGTTTTTGTATTAAATGTTTAAACATTAGTACCGCAAATTCACA 13526 Query 37190 ATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACC 37249 || || |||||||| | ||||| ||||||||| || ||||| |||||||||| || Sbjct 13525 GTGCAAGCCTTCATCACGTGATATCATTTCATTAGAGAATGTTAAACCTGGCATTATTCC 13466 Query 37250 TCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGC 37309 | ||| || | ||||||||| | || || ||| ||||||||||||||| || || Sbjct 13465 ACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTGCCACTAAAGAAAATACCTTCGACAGC 13406 Query 37310 TGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGT 37369 || || |||| | ||| || ||| | | || || |||||| | | Sbjct 13405 AGCGAAAGCTATGATACGCTCGCCAAAATTAGCCGAATGCGATGATATCCATGCTAGAGC 13346 Query 37370 CCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGAGAAAGttttt 37429 ||| || ||||| ||||| || ||||| ||||| || || |||||| | | Sbjct 13345 CCATTCGGCCTTCTTCTTAACCAATGGCATTGTCTCAATGGCATTAAAGAGATATTCACG 13286 Query 37430 ttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATT 37489 ||||| ||| | ||||| || || || |||| |||||||||||| || || | ||| Sbjct 13285 TTCTTTCTCATCCATGATATATGTTTCGATAAGTAGACTATACATTTCCGAATGCACATT 13226 Query 37490 TTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTAAA 37549 ||| || || || |||||||| ||||| || | |||||||| || |||||| || | | Sbjct 13225 TTCCATGGCAATTTGAAAACCGTAAAAGCAACGAGCTTCAGTTATTTGAACCTCTTGGGA 13166 Query 37550 AAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAAC 37609 ||| | | |||| || |||||||| || ||||| || ||||| ||||| | ||| Sbjct 13165 AAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGCCGCAAAAAAAGCCAAAAC 13106 Query 37610 ATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAATCATTAATATCTTTTGA 37669 || | |||||||| | ||| | | ||| |||||||| | || ||||| || Sbjct 13105 ATGTGAAATAAAATGCCGTTCGCCGTCACTTAACCGATTCCAATCGTCCATGTCTTTAGA 13046 Query 37670 TAAATCAACTTCATCAACGGTCCAAAAA 37697 | ||||| || ||| | ||||||||| Sbjct 13045 GAGGTCAACCTCTTCAGCAGTCCAAAAA 13018 >seq21866 Length=17884 Score = 104 bits (114), Expect = 3e-17 Identities = 84/102 (82%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 153287 AGGTGTTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGC 153346 ||| || |||||||||||||| ||| | || |||||||| ||| | ||| | |||||||| Sbjct 6568 AGGAGTCTTACATACAAAATTATGGGTTGTAGATAATAAGCATTTTTATGTGGGAAGTGC 6509 Query 153347 TAATATGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGG 153388 |||||||||||||| || | |||||||| ||||| ||||| Sbjct 6508 AAATATGGATTGGAGGTCTTTGACTCAAGTCAAAGAGTTAGG 6467 >seq6733 Length=17533 Score = 104 bits (114), Expect = 3e-17 Identities = 84/102 (82%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 153287 AGGTGTTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGC 153346 ||| || |||||||||||||| ||| | || |||||||| ||| | ||| | |||||||| Sbjct 10966 AGGAGTCTTACATACAAAATTATGGGTTGTAGATAATAAGCATTTTTATGTGGGAAGTGC 11025 Query 153347 TAATATGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGG 153388 |||||||||||||| || | |||||||| ||||| ||||| Sbjct 11026 AAATATGGATTGGAGGTCTTTGACTCAAGTCAAAGAGTTAGG 11067 >seq864 Length=64046 Score = 104 bits (114), Expect = 3e-17 Identities = 84/102 (82%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 153287 AGGTGTTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGC 153346 ||| || |||||||||||||| ||| | || |||||||| ||| | ||| | |||||||| Sbjct 5944 AGGAGTCTTACATACAAAATTATGGGTTGTAGATAATAAGCATTTTTATGTGGGAAGTGC 6003 Query 153347 TAATATGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGG 153388 |||||||||||||| || | |||||||| ||||| ||||| Sbjct 6004 AAATATGGATTGGAGGTCTTTGACTCAAGTCAAAGAGTTAGG 6045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592138579278840