Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq23389 178 1e-39 seq4550 176 4e-39 seq4549 149 5e-31 seq11312 147 2e-30 seq16703 109 4e-19 seq181 102 6e-17 seq20437 96.9 3e-15 >seq23389 Length=58516 Score = 178 bits (196), Expect = 1e-39 Identities = 176/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101242 TCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGC 101301 ||| |||| ||||| | || | ||| | ||| ||||||||||| ||||| ||||||| Sbjct 44401 TCCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGA 44460 Query 101302 GATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGG 101361 | || | | |||| ||||||||||| || || || ||||| ||||| || ||||| || Sbjct 44461 CAATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCGGGTGG 44520 Query 101362 AATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCAC 101421 ||| || ||||| || ||||| || ||||||| |||| | |||||| || | ||| || Sbjct 44521 AATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCAATAGTGTCCGAGGGTTCGAC 44580 Query 101422 TTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 |||||||||| || ||||| |||| ||||||||||| |||||||| Sbjct 44581 CTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 44628 >seq4550 Length=29190 Score = 176 bits (194), Expect = 4e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| || || || ||||| |||||||| |||||||| |||||||| | Sbjct 5970 CCTCCGCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCCGAC 5911 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| ||||| || || || ||||| ||||||||||| || || || ||| Sbjct 5910 AATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 5851 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || || || |||||| ||| || |||| | |||||| |||| ||||||| Sbjct 5850 ATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCACT 5791 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||||| |||||| || || |||||||| |||||||| ||||| Sbjct 5790 TCCAAAGTGATCGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 5744 Score = 156 bits (172), Expect = 3e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | | ||| || || ||||| | || ||||| |||||||| |||||||| | Sbjct 5744 TTCCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCG 5685 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | || | |||| ||||| || || || ||||| ||||||||||| || || || | Sbjct 5684 ACAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 5625 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| || || || |||||| ||| || |||| | |||||| |||| ||||| Sbjct 5624 GAATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCA 5565 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || | ||| | |||||| || || |||||||| |||||||| ||||| Sbjct 5564 CCTCCAAAGTAATCGTTTTCCCAGTCAAAGTTTTAACAAATATTTGCAT 5516 Score = 152 bits (168), Expect = 4e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 |||| || | | ||| || || ||||| | || ||||| |||||||| |||||||| | Sbjct 5516 TTCCACCACGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCG 5457 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | || | |||| ||||| ||||| || ||||| ||||||||||| || || || | Sbjct 5456 ACAATGTGCGCCCATCTTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 5397 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| ||||| || || || |||||| ||| || |||| | ||| || || | ||| | Sbjct 5396 GAATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCTA 5337 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || | ||||| ||||||||||| ||||| || |||||||| ||||| Sbjct 5336 CCTCCAAAGTGATGGTTTTGCCGGTCAAAGTCTTAACAAATATTTGCAT 5288 Score = 150 bits (166), Expect = 1e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 ||||||||||| ||||| || || |||||||| || || ||||| |||| || || | | Sbjct 5277 AAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGG 5218 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 ||| ||||| || || || ||||| ||||||||||||||||| || || | |||||| Sbjct 5217 CCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGTTGATCTGGTGGGACTCCTTCT 5158 Query 101372 TTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTG 101431 |||||||||||||| ||| ||| | || | ||| || || | || || || | ||| Sbjct 5157 TTATCTTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTG 5098 Query 101432 ACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | ||||| || || || || || || || |||||||| Sbjct 5097 ATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCAT 5060 >seq4549 Length=20005 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || | || ||||| || ||||| | || || || || || ||||||||||| | Sbjct 19705 CCACCGCGTAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCAGAC 19646 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | || ||||||||||| || ||||| |||||||| || ||||| || ||| Sbjct 19645 AAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGA 19586 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || ||||||||||| || ||| |||| | ||| || || | ||| ||| Sbjct 19585 ATACCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCGATAGTATCCGATGGTTCAACT 19526 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||| | |||||||| ||||| ||||||||||| || ||||| Sbjct 19525 TCCAAAGTAATAGTTTTGCCAGTTAATGTTTTTACAAAGATTTGCAT 19479 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||||| || ||||| | || || || ||||| || |||||||| | | || | | Sbjct 19922 ACGTAGGACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAATCAGATAGGGTGCGTCC 19863 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || ||||||||||| || ||||| |||||||| || ||||| || ||||| ||||| || Sbjct 19862 GTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTT 19803 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||||||||| || || |||| | ||||| || | || ||||| || |||| Sbjct 19802 GTCTTGAATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGACTTCTAGGGTGAT 19743 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| || || ||||| || || || ||||| Sbjct 19742 GGTCTTGCCAGTCAATGTTTTGACGAAAATTTGCAT 19707 >seq11312 Length=46762 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || || | ||| || || |||||||| ||||| |||| | || | |||| ||| Sbjct 38364 ACCAAGTGCAAGGTCGACTCCTTTTGTATGTTGTAGTCGGATAACGTGCGTCCATCTTCC 38305 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 |||||||| || || || |||||||| |||||||| || ||||||||||||||||| ||| Sbjct 38304 AATTGCTTGCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGA 38245 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| || ||| |||| | |||||| || | || ||||| | ||| | |||||| Sbjct 38244 ATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTG 38185 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | |||||| || || || ||||| Sbjct 38184 CCAGTAAGAGTTTTAACGAAAATTTGCAT 38156 >seq16703 Length=4054 Score = 109 bits (120), Expect = 4e-19 Identities = 123/162 (76%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 101252 AAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTG 101311 ||||| |||| | ||||| ||||| ||||| | ||||| || |||| || ||| | | Sbjct 2196 AAACGCAAAATCACTTGAAGAGTAGACTCTTTCTCAATATTATATTCGGAGAGAGTACGG 2255 Query 101312 GCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCT 101371 |||| ||||||||||| || |||||||||||| ||| || || | ||||| ||||| Sbjct 2256 TCATCTTCCAATTGCTTGCCATCAAATATCAAACACTGCTGGTCTAGAGGAATAACTTCT 2315 Query 101372 TTATCTTGAATTTTTTGTTTTA-CAATTTCTACAGTGTCAGA 101412 || |||| ||||||| ||| | ||||| || |||||||| Sbjct 2316 TTGTCTTCAATTTTTGCTTTGATGTATTTC-ACGGTGTCAGA 2356 >seq181 Length=60274 Score = 102 bits (112), Expect = 6e-17 Identities = 154/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 101251 TAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCT 101310 |||||||||||| ||||| || || || | |||||||| || || || | || | Sbjct 37562 TAAACGTAAAACCAAATGGAGAGTCGAGCCCTTTTGTATGTTATAGTCCATTAATGTGCA 37621 Query 101311 GGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTC 101370 |||| |||| ||||| || || | |||||||| |||||| || || ||||| || Sbjct 37622 ACCATCTTCCAGCTGCTTGCCGGCGTAAATCAAACGACGTTGATTTGGTGGGATGCCGTC 37681 Query 101371 TTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGT 101430 ||||| |||| || ||| | |||| | ||| || | || ||| || || | ||| Sbjct 37682 TTTATTCCGAATCTTGGTTTTAATCGTTTCAATAGTATCGGTCGGTTCGACATCTAAAGT 37741 Query 101431 GACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || ||||| ||||| || || |||||||| Sbjct 37742 GATGGTATTTCCCGTTAACGTTTTCACGAAAATCTGCAT 37780 >seq20437 Length=48329 Score = 96.9 bits (106), Expect = 3e-15 Identities = 110/146 (75%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 13756 ACCGGCATAACCGTTGGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGC 13815 |||| ||||||| |||||||| |||||||||||||||| | || || ||| || || Sbjct 15775 ACCGACATAACCATTGGGATCCGTTCCATCCAAACTGTATCTATCATTTAAAAGTA--GC 15832 Query 13816 GTTGATT--AAAGCCACTGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATAT 13873 | ||| ||||| || ||| ||||||||||||| || |||||||||||||| Sbjct 15833 GAAAATTCCAAAGCGTCTTCAGGGCTTTTAGACCATTCTAAAATCTTTTTAGCCCAATAC 15892 Query 13874 ATTCTCATATATCCGTGCATTTTGCC 13899 || | || | | ||||||||||| || Sbjct 15893 ATGCGCAAAAAGCCGTGCATTTTACC 15918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396162145663347