Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq4550 118 8e-22 seq23389 109 4e-19 seq4549 104 2e-17 seq7078 100 2e-16 >seq4550 Length=29190 Score = 118 bits (130), Expect = 8e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||||||||| | ||| || ||||| || |||||||| || | | || Sbjct 5733 AGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGC 5674 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||||||| || || ||||| |||| ||||| || || | |||| || ||| Sbjct 5673 CCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCC 5614 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || ||| ||| || | | || || |||| |||||||||| ||| Sbjct 5613 TTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCACCTCCAAAGTA 5554 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||||| || ||||||||||| ||||| || ||||| Sbjct 5553 ATCGTTTTCCCAGTCAAAGTTTTAACAAATATTTGCAT 5516 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || ||||||||||| || || || || ||||| || |||||||| || | | || Sbjct 5961 AGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGC 5902 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||||||| || || ||||| |||| ||||| || || | |||| || ||| Sbjct 5901 CCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCC 5842 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || ||| ||| || | | || || |||| ||||| |||| || Sbjct 5841 TTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCACTTCCAAAGTG 5782 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||||||||| ||||||||||| ||||| || ||||| Sbjct 5781 ATCGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 5744 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||||||||| | ||| || ||||| || |||||||| || | | || Sbjct 5505 AGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGC 5446 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| || ||||| |||| ||||| || || | |||| || ||| Sbjct 5445 CCATCTTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCC 5386 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| || ||| ||| || | | || || || | || ||||||| || Sbjct 5385 TTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCTACCTCCAAAGTG 5326 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || |||||||| || ||||| || ||||| Sbjct 5325 ATGGTTTTGCCGGTCAAAGTCTTAACAAATATTTGCAT 5288 Score = 95.1 bits (104), Expect = 9e-15 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 || || |||||||| || || ||||| ||||| ||||| || || || | || | Sbjct 5274 CGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCA 5215 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 | |||||||| || || ||||| |||| ||||||||||| | || || || || || Sbjct 5214 TTTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGTTGATCTGGTGGGACTCCTTCTTTA 5155 Query 48672 TCGCTAATCTTTTGTTTT-ACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAAT 48730 || ||| ||| ||||| ||| | | || || || | ||| ||||||| || || Sbjct 5154 TCTTGAAT-TTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTGAT 5096 Query 48731 CGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || ||||| || || || || |||||||| Sbjct 5095 AGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCAT 5060 >seq23389 Length=58516 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 |||| ||| | ||||| ||| |||||||||||||| ||||| || | | || | Sbjct 44414 CGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGGCCA 44473 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || ||||| ||||| || || || |||| |||||| || || | |||| ||||| ||| Sbjct 44474 TCTTCCAATTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCGGGTGGAATTCCCTCTTTG 44533 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || |||||| ||||||| | | || || || | || ||||| | || || Sbjct 44534 TCCTGAATCTTGGCTTTTACATTTTCAATAGTGTCCGAGGGTTCGACCTCAAGAGTGATG 44593 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| | |||||||||||||||||||| Sbjct 44594 GTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 44628 >seq4549 Length=20005 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| || | |||||||| | || ||| || ||||||||||||||||| Sbjct 19705 CCACCGCGTAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCAGAC 19646 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | || |||| ||||| ||||| || ||||| |||| || || ||||| | |||| Sbjct 19645 AAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGA 19586 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || |||||||| ||| || || ||| | | || || || | || || Sbjct 19585 ATACCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCGATAGTATCCGATGGTTCAACT 19526 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| ||||| || || || ||||||||||| || ||||| Sbjct 19525 TCCAAAGTAATAGTTTTGCCAGTTAATGTTTTTACAAAGATTTGCAT 19479 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| | || ||| |||||||| |||||||||||||| | || |||| ||| Sbjct 19915 ACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAATCAGATAGGGTGCGTCCGTCTTCC 19856 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || ||||| || ||||| |||| || || ||||| | ||||| || |||||||| | Sbjct 19855 AATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGA 19796 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || || || | | | || || | ||| || || | || || || || Sbjct 19795 ATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGACTTCTAGGGTGATGGTCTTG 19736 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| ||||| || ||||| ||||| Sbjct 19735 CCAGTCAATGTTTTGACGAAAATTTGCAT 19707 >seq7078 Length=255504 Score = 100 bits (110), Expect = 2e-16 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 9067 GGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAG 9126 ||||| || || | || ||||| ||||| ||||| | ||| || || || |||| Sbjct 23659 GGATAGAATATACGCTCGCAAATCAATTGGGCAATGCGGTCACCACGCTTAACATCAAAA 23600 Query 9127 TCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATC 9186 || |||||||||||||| || | || |||| || || | |||||| ||||| ||| Sbjct 23599 TCAACATCGGAATGATTGAAAAGAAGAACACCCAAATTGCCTCGGTAATCTTCATCAATC 23540 Query 9187 ACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGA 9246 |||||||| ||||| |||||||||| ||| || | || || || || || | ||| Sbjct 23539 ACACCAGCTCCCACATCGATGAAGTTCTTCCAGGCCAAGCCGGATCGTGGTGCTACGCGA 23480 Query 9247 CCGTA 9251 ||||| Sbjct 23479 CCGTA 23475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380825846121933