Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020
14-03-12] 24,071 sequences; 363,107,242 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq4550 118 8e-22
seq23389 109 4e-19
seq4549 104 2e-17
seq7078 100 2e-16
>seq4550
Length=29190
Score = 118 bits (130), Expect = 8e-22
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||||||||||||| | ||| || ||||| || |||||||| || | | ||
Sbjct 5733 AGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGC 5674
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || |||||||| || || ||||| |||| ||||| || || | |||| || |||
Sbjct 5673 CCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCC 5614
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| || ||| ||| || | | || || |||| |||||||||| |||
Sbjct 5613 TTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCACCTCCAAAGTA 5554
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||||||| || ||||||||||| ||||| || |||||
Sbjct 5553 ATCGTTTTCCCAGTCAAAGTTTTAACAAATATTTGCAT 5516
Score = 109 bits (120), Expect = 4e-19
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| ||||||||||| || || || || ||||| || |||||||| || | | ||
Sbjct 5961 AGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGC 5902
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || |||||||| || || ||||| |||| ||||| || || | |||| || |||
Sbjct 5901 CCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCC 5842
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| || ||| ||| || | | || || |||| ||||| |||| ||
Sbjct 5841 TTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCACTTCCAAAGTG 5782
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||||||||| ||||||||||| ||||| || |||||
Sbjct 5781 ATCGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 5744
Score = 100 bits (110), Expect = 2e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||||||||||||| | ||| || ||||| || |||||||| || | | ||
Sbjct 5505 AGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGC 5446
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || ||||||||||| || ||||| |||| ||||| || || | |||| || |||
Sbjct 5445 CCATCTTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCC 5386
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| || ||| ||| || | | || || || | || ||||||| ||
Sbjct 5385 TTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCTACCTCCAAAGTG 5326
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| ||||| || |||||||| || ||||| || |||||
Sbjct 5325 ATGGTTTTGCCGGTCAAAGTCTTAACAAATATTTGCAT 5288
Score = 95.1 bits (104), Expect = 9e-15
Identities = 152/216 (70%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611
|| || |||||||| || || ||||| ||||| ||||| || || || | || |
Sbjct 5274 CGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCA 5215
Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671
| |||||||| || || ||||| |||| ||||||||||| | || || || || ||
Sbjct 5214 TTTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGTTGATCTGGTGGGACTCCTTCTTTA 5155
Query 48672 TCGCTAATCTTTTGTTTT-ACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAAT 48730
|| ||| ||| ||||| ||| | | || || || | ||| ||||||| || ||
Sbjct 5154 TCTTGAAT-TTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTGAT 5096
Query 48731 CGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||| || ||||| || || || || ||||||||
Sbjct 5095 AGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCAT 5060
>seq23389
Length=58516
Score = 109 bits (120), Expect = 4e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611
|||| ||| | ||||| ||| |||||||||||||| ||||| || | | || |
Sbjct 44414 CGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGGCCA 44473
Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671
|| ||||| ||||| || || || |||| |||||| || || | |||| ||||| |||
Sbjct 44474 TCTTCCAATTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCGGGTGGAATTCCCTCTTTG 44533
Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731
|| |||||| ||||||| | | || || || | || ||||| | || ||
Sbjct 44534 TCCTGAATCTTGGCTTTTACATTTTCAATAGTGTCCGAGGGTTCGACCTCAAGAGTGATG 44593
Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || ||||| | ||||||||||||||||||||
Sbjct 44594 GTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 44628
>seq4549
Length=20005
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|| || | ||| || | |||||||| | || ||| || |||||||||||||||||
Sbjct 19705 CCACCGCGTAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCAGAC 19646
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
| | || |||| ||||| ||||| || ||||| |||| || || ||||| | ||||
Sbjct 19645 AAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGA 19586
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| || |||||||| ||| || || ||| | | || || || | || ||
Sbjct 19585 ATACCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCGATAGTATCCGATGGTTCAACT 19526
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|||| ||||| ||||| || || || ||||||||||| || |||||
Sbjct 19525 TCCAAAGTAATAGTTTTGCCAGTTAATGTTTTTACAAAGATTTGCAT 19479
Score = 93.3 bits (102), Expect = 3e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
|||||||| | || ||| |||||||| |||||||||||||| | || |||| |||
Sbjct 19915 ACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAATCAGATAGGGTGCGTCCGTCTTCC 19856
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
|| ||||| || ||||| |||| || || ||||| | ||||| || |||||||| |
Sbjct 19855 AATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTCTTGA 19796
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
|| || || || | | | || || | ||| || || | || || || ||
Sbjct 19795 ATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGACTTCTAGGGTGATGGTCTTG 19736
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| ||||| ||||| || ||||| |||||
Sbjct 19735 CCAGTCAATGTTTTGACGAAAATTTGCAT 19707
>seq7078
Length=255504
Score = 100 bits (110), Expect = 2e-16
Identities = 133/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 9067 GGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAG 9126
||||| || || | || ||||| ||||| ||||| | ||| || || || ||||
Sbjct 23659 GGATAGAATATACGCTCGCAAATCAATTGGGCAATGCGGTCACCACGCTTAACATCAAAA 23600
Query 9127 TCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATC 9186
|| |||||||||||||| || | || |||| || || | |||||| ||||| |||
Sbjct 23599 TCAACATCGGAATGATTGAAAAGAAGAACACCCAAATTGCCTCGGTAATCTTCATCAATC 23540
Query 9187 ACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGA 9246
|||||||| ||||| |||||||||| ||| || | || || || || || | |||
Sbjct 23539 ACACCAGCTCCCACATCGATGAAGTTCTTCCAGGCCAAGCCGGATCGTGGTGCTACGCGA 23480
Query 9247 CCGTA 9251
|||||
Sbjct 23479 CCGTA 23475
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380825846121933
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |