Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq17808 134 7e-27 seq15038 105 3e-18 >seq17808 Length=19168 Score = 134 bits (148), Expect = 7e-27 Identities = 165/222 (74%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 25921 CTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTC- 25979 ||| ||| | | ||| ||||||||||| ||||||| ||||||||||||||| | || | Sbjct 18737 CTCTACTCTTTTCATGAATAAATCTGGTATCCACAGTGCATAAAATAAATCCCGTGCACG 18678 Query 25980 -TCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGC 26038 || || || |||| |||| ||||||||| | | || || || |||||||||| |||| Sbjct 18677 GTC-TTCCTCCTTTCCCGT-ATTCTTTTTCAAGTTTAGAAATTCGAAAATATCTGCGTGC 18620 Query 26039 CATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTAT 26098 || ||||||||||| ||||| ||| || | ||| || |||||||| ||||| || Sbjct 18619 CAAGGTTCTAAATATATAGCGAAAGCCCCCGGACGTTTCCCACCACCTTGGTCTACATAA 18560 Query 26099 CTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCA 26140 | ||| | ||||||| |||||| ||||| | |||| Sbjct 18559 CGGGCAACATTGTTGAAAAGACGCAACATAGGAACAAGTCCA 18518 >seq15038 Length=36294 Score = 105 bits (116), Expect = 3e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 25921 CTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCT 25980 ||||||| | | ||| || | ||| || ||||||| |||||||||||||||| || | Sbjct 5681 CTCAACTCTTTTCATGAACAGATCAGGTATCCACAGAGCATAAAATAAATCTCGTGCACG 5740 Query 25981 CATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCA 26040 || ||||| || ||| ||||| | || || || || |||||||||| |||||| Sbjct 5741 ATCCTCCTCTTTACCCGTATTTTTTTTCAAATTTAGAAATTCGAAAATATCTGCGTGCCA 5800 Query 26041 TGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCT 26100 || ||||| || ||||||||| || | |||||| |||||||| || || || | Sbjct 5801 AGGCTCTAAGTATATAGCAAAAGCCCCCGGACGTTTTCCACCACCTTGGTCGACATAACG 5860 Query 26101 TGCAGTTTCATTGAAAACTTTCAACATTGGAAC 26133 ||| | ||||| | |||||| ||||| Sbjct 5861 GGCAACATTGTTGAACAGACGCAACATAGGAAC 5893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252965766841325