Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq14689 93.3 5e-14 seq20331 84.2 3e-11 >seq14689 Length=1457 Score = 93.3 bits (102), Expect = 5e-14 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 |||||||| |||||||| || ||||||| | |||||| || |||||| || ||| Sbjct 956 TTTGTGGAAATGTTTGTCGGCATGGGTGCATCGAAGGTTCGTGACCTCTTTAAACAGGCC 897 Query 175456 CGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGC 175515 ||||| || ||||| || || ||||||||||||||||| | || ||| |||| Sbjct 896 AAAGAAAAAGCTCCGTGTATCGTGTTTATTGATGAGATTGATGCCATCGGTAAGAAACGT 837 Query 175516 AGCG--CTGGTGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCA 175573 || | | ||| | || | ||| || ||| | ||||| || | || || || || | Sbjct 836 GACGGTCAGATGGCAGGC--GGAAACGATGAGCGCGAACAGACTCTGAACCAGCTCCTTA 779 Query 175574 CCGAGATGGATGGCTTTGA 175592 | ||||||||||| || || Sbjct 778 CTGAGATGGATGGTTTCGA 760 >seq20331 Length=18106 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 |||||||| ||||| ||||| || || || | || || ||| | ||||| ||||| Sbjct 15567 CCAGGTACTGGAAAAACCCTACTTGCAAAGGCGACTGCAGGAGAAGCTAATGTGCCATTT 15626 Query 175375 ATCCAGTG-CTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 ||| | || ||||| | | || | || ||||||||||| |||||| | || || Sbjct 15627 ATC-ACTGTCTCTGGTTCCGAATTCTTAGAAATGTTTGTTGGCGTGGGTCCATCGAGAGT 15685 Query 175434 TCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 || ||| | |||| | | ||||| ||||| || || ||| |||| |||||||| || Sbjct 15686 GCGTGATATGTTTGCATTGGCCCGTAAAAATGCTCCTTGCATTCTCTTTATTGATGAAAT 15745 Query 175494 TGATGCGGTGGGC 175506 || ||||| ||| Sbjct 15746 AGACGCGGTAGGC 15758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596390099664480