Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq11312 167 4e-36 seq23389 149 1e-30 seq4549 145 1e-29 seq4550 140 6e-28 seq181 93.3 8e-14 >seq11312 Length=46762 Score = 167 bits (184), Expect = 4e-36 Identities = 187/250 (75%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 193130 TATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTC 193189 ||| ||||| | | || ||||||| ||||| || | ||| || || || ||||| Sbjct 38386 TATGCCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTGTAGTC 38327 Query 193190 GGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGG 193249 ||||||||| | ||| || ||||| || || || ||||| || | |||||||| || Sbjct 38326 GGATAACGTGCGTCCATCTTCCAATTGCTTGCCAGCGAAAATCAAACGTTGTTGATCTGG 38267 Query 193250 AGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTC 193309 ||| || ||||||||||| || ||||||| || | |||| |||||| ||||||| ||| Sbjct 38266 AGGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTC 38207 Query 193310 AACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTATTAGT 193369 |||||| | ||| |||||||| || || || ||||| || || ||||||||||| || | Sbjct 38206 AACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTTTATATT 38147 Query 193370 AAAATAATTA 193379 || ||||| Sbjct 38146 CTAAAAATTA 38137 >seq23389 Length=58516 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||||| ||| || || || ||||| || || | ||||| ||||||||| ||||| Sbjct 44402 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 44461 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 || || | ||| || ||||| ||||| || ||||| |||| ||| || || || || Sbjct 44462 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCGGGTGGA 44521 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 ||||| ||||| || || || |||| ||||| |||| |||||| || || | || || Sbjct 44522 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCAATAGTGTCCGAGGGTTCGACC 44581 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || ||||| || || || || ||||| ||||||||||| || ||||| || Sbjct 44582 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 44631 >seq4549 Length=20005 Score = 145 bits (160), Expect = 1e-29 Identities = 176/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| |||||||| | | || || |||| ||||||||| | ||| || |||||| Sbjct 19715 AATTTGCATACCACCGCGTAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATT 19656 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || || || || | || || ||||| || || |||||||| || | || || Sbjct 19655 GTAATCAGACAAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTG 19596 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || || ||||| || ||||| ||||| | || | |||| |||||||| || Sbjct 19595 ATCTGGGGGAATACCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCGATAGTATCCGA 19536 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 | |||||||| | ||| |||||||| || |||| ||||||||||| ||||||||||| Sbjct 19535 TGGTTCAACTTCCAAAGTAATAGTTTTGCCAGTTAATGTTTTTACAAAGATTTGCATTTT 19476 >seq4550 Length=29190 Score = 140 bits (154), Expect = 6e-28 Identities = 175/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | ||| || | |||| ||| | ||| | ||||| ||| || Sbjct 5295 ATTTGCATACCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTG 5236 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| | || | || || || ||||| || ||||| || || | ||||||| Sbjct 5235 TAGTCGGAGAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGTTGA 5176 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || | ||||||||||||||| ||||| ||||| | ||| |||||||||||| Sbjct 5175 TCTGGTGGGACTCCTTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTATCGGAT 5116 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTA 193364 | |||||| || | || |||||||| || || | || || || || || ||||||||| Sbjct 5115 GGCTCAACCTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATTTTA 5056 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||| ||||||||| | || || || || || || || || || | ||| || Sbjct 5496 ACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCATCTTCC 5437 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 || || ||||| ||||| || || | ||| || || ||||| || ||||| || || || Sbjct 5436 AACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGG 5377 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 ||||| | ||| | ||| |||||||| || || || || || | ||| || ||||| Sbjct 5376 ATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCTACCTCCAAAGTGATGGTTTTG 5317 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | || || |||||||||||||| Sbjct 5316 CCGGTCAAAGTCTTAACAAATATTTGCAT 5288 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 |||| ||||||||| | || || || || || || || || || | ||| || Sbjct 5724 ACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCATCTTCC 5665 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 || ||||| || ||||| || || | ||| || || ||||| || ||||| || || || Sbjct 5664 AACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGG 5605 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 ||||| | ||| | ||| ||||| || || | || || || | ||| || ||||| Sbjct 5604 ATTTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCACCTCCAAAGTAATCGTTTTC 5545 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || | ||||| ||||||||||||||| Sbjct 5544 CCAGTCAAAGTTTTAACAAATATTTGCATT 5515 Score = 95.1 bits (104), Expect = 2e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || || ||||| || ||||| || || | ||| || || ||||| || ||||| || Sbjct 5899 ATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTT 5840 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 || || ||||| | ||| | ||| ||||| || || | || ||||| | ||| || Sbjct 5839 GTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCACTTCCAAAGTGAT 5780 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| || || | ||||| ||||||||||||||| Sbjct 5779 CGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCATT 5743 >seq181 Length=60274 Score = 93.3 bits (102), Expect = 8e-14 Identities = 168/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGT--AGCCTCTTTAGAAATA 193181 ||||| ||||||||| || || | |||| ||| | || |||| |||| | | | Sbjct 37544 AATTTTTATACCACCAAGTAAACGTAAAACCAAATGGAGAGTCGAGCC-CTTTTGTA-TG 37601 Query 193182 TTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGT 193241 |||||||| ||| || | | ||| || | || || ||||| |||| || | || Sbjct 37602 TTATAGTCCATTAATGTGCAACCATCTTCCAGCTGCTTGCCGGCGTAAATCAAACGACGT 37661 Query 193242 TGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCG 193301 |||| || || || || ||||||| | || |||||||| || || |||||||||| Sbjct 37662 TGATTTGGTGGGATGCCGTCTTTATTCCGAATCTTGGTTTTAATCGTTTCAATAGTATCG 37721 Query 193302 GAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | | || || |||| ||| || || || || |||| |||||| || || || |||||| Sbjct 37722 GTCGGTTCGACATCTAAAGTGATGGTATTTCCCGTTAACGTTTTCACGAAAATCTGCATT 37781 Query 193362 TT 193363 || Sbjct 37782 TT 37783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899383705236720