Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq9454 203 5e-47 seq11312 127 3e-24 seq4549 125 1e-23 seq4550 123 4e-23 >seq9454 Length=16677 Score = 203 bits (224), Expect = 5e-47 Identities = 371/538 (69%), Gaps = 10/538 (2%) Strand=Plus/Minus Query 18160 CGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCC 18219 |||||| ||| ||| || |||||||| | ||||| | ||| ||| || ||||| || Sbjct 13537 CGCAAATTCACAGTGCAAGCCTTCATCACGTGATATCATTTCATTAGAGAATGTTAAACC 13478 Query 18220 GGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATAT 18279 |||||||| || | ||| ||||||||||||||||| ||||| || | | |||||| || Sbjct 13477 TGGCATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTGCCACTAAAGAAAAT 13418 Query 18280 ACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATT-GCTCAGT 18337 ||| || || ||| ||||| ||||| | | || ||||| | || | | | | Sbjct 13417 ACCTTCGACAGCA-GCGAAAGCTATGATACGCTCGCCAAAATTAGCCGAATGCGATGA-T 13360 Query 18338 ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTA 18397 |||||| | | |||||||| | | | | || || |||| || |||||| Sbjct 13359 ATCCATGCTAGAGCCCATTCGGCCTTCTTCTTAACCAATGGCATTGTCTCAATGGCATTA 13300 Query 18398 AACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATT 18457 || | || || |||||| ||| | ||||| || ||||| | | | ||||||| Sbjct 13299 AAGAGATATTCACGTTCTTTCTCATCCATGATATATGTTTCGATAAGTAGACTATACATT 13240 Query 18458 TCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATAT 18517 || ||||| | ||||||| || || ||||||| ||||| | | ||| || | | Sbjct 13239 TCCGAATGCACATTTTCCATGGCAATTTGAAAACCGTAAAAGCAACGAGCTTCAGTTATT 13180 Query 18518 TGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCG 18577 |||| ||| |||||| ||| || |||||||||||||| ||||| || | | || Sbjct 13179 TGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGCCGCA 13120 Query 18578 AAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATC-CTTGA--GATTGTTCCAT 18634 ||||| |||||||||| | ||| ||||| ||| || ||| | || ||||| Sbjct 13119 AAAAAAGCCAAAACATGTGAAATAAAATGCCGTTCGCCGTCACTTAACCGA---TTCCAA 13063 Query 18635 TCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCT 18692 || || || ||||| || || ||||| ||||| | ||||||||||| | ||| |||| Sbjct 13062 TCGTCCATGTCTTTAGAGAGGTCAACCTCTTCAGCAGTCCAAAAAGAGGCTTCCGCCT 13005 >seq11312 Length=46762 Score = 127 bits (140), Expect = 3e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| || ||||||| | ||||| ||||||||||| || ||||| || | Sbjct 38153 AAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCT 38212 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | |||| ||| || || ||||| || |||||||||||||| |||||||| Sbjct 38213 TCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGAT 38272 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | ||||||| || || ||||| | |||||| | || ||||| || || Sbjct 38273 CAACAACGTTTGATTTTCGCTGGCAAGCAATTGGAAGATGGACGCACGTTATCCGACTAC 38332 Query 156000 AATATATCCAAAGAGGCGAC 156019 || ||| || ||| |||| Sbjct 38333 AACATACAAAAGGAGTCGAC 38352 >seq4549 Length=20005 Score = 125 bits (138), Expect = 1e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| ||| | |||||||| ||||| ||||||||||| || ||||| ||| Sbjct 19476 AAAATGCAAATCTTTGTAAAAACATTAACTGGCAAAACTATTACTTTGGAAGTTGAACCA 19535 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| ||| ||| || || |||||| ||||| || ||||| || || ||||| Sbjct 19536 TCGGATACTATCGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGAT 19595 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || ||| | ||||||| ||| || ||||| | ||||| | || || || ||||| Sbjct 19596 CAGCAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCTGATTAC 19655 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGT 156031 ||||| || ||| |||| | ||||| || Sbjct 19656 AATATTCAGAAGGAGTCGACATTGCATTTGGT 19687 Score = 111 bits (122), Expect = 2e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | |||||||||||||| || || || || |||||||||| ||| Sbjct 19707 ATGCAAATTTTCGTCAAAACATTGACTGGCAAGACCATCACCCTAGAAGTCGAGCCTTCC 19766 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||| || |||||| ||||| || ||||| || || ||||| || Sbjct 19767 GACACCATTGAAAACGTCAAGGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 19826 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | ||||||| ||| || ||||| | ||||| | || |||| ||||| || Sbjct 19827 CAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCCTATCTGATTACAAC 19886 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGT 156031 || || ||| ||| |||| | ||||| || Sbjct 19887 AT-TCAAAAGGAGTCGACATTGCATTTGGT 19915 >seq4550 Length=29190 Score = 123 bits (136), Expect = 4e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||||||| ||||||| |||||||||||||| || || || ||||| ||| || Sbjct 5743 AATGCAAATATTTGTTAAAACTTTGACTGGAAAAACGATCACTTTGGAAGTGGAACCGTC 5802 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| |||||| ||| ||||| || || || ||||| || |||||||| || Sbjct 5803 GGACACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCA 5862 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || | ||||| | ||| || || ||| | |||||| | || || || ||||| || Sbjct 5863 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCGGATTACAA 5922 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 ||| || || | || ||||| || ||||| Sbjct 5923 CATACAAAAGGAATCTACTCTTCACTTGGTGTT 5955 Score = 114 bits (126), Expect = 2e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||||||| ||||||| |||||||| ||||| ||||| || || || ||| || Sbjct 5515 AATGCAAATATTTGTTAAAACTTTGACTGGGAAAACGATTACTTTGGAGGTGGAACCGTC 5574 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| |||||| ||| ||||| || || || ||||| || |||||||| || Sbjct 5575 GGACACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCA 5634 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || | ||||| | ||| || || ||| | |||||| | || || || ||||| || Sbjct 5635 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCGGATTACAA 5694 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 ||| || || | || | ||||| ||||| Sbjct 5695 CATACAAAAGGAATCCACATTGCATTTGGTGTT 5727 Score = 113 bits (124), Expect = 7e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 155819 TAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGA 155878 ||||||||| || || | || ||||||||||| |||||||| || || || || || Sbjct 5056 TAAAATGCAGATCTTCGTGAAGACATTGACTGGGAAAACTATCACCTTGGAGGTTGAGCC 5115 Query 155879 TTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGA 155938 || |||| |||| || || |||| |||||| |||||||||||||| | || ||||| Sbjct 5116 ATCCGATACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAAGGAGTCCCACCAGA 5175 Query 155939 ACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTA 155998 ||||| | ||||| | ||| || || ||| | ||| || | | || | || || || Sbjct 5176 TCAACAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCCGACTA 5235 Query 155999 TAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTA 156035 || || ||||| |||| || ||||| || ||| Sbjct 5236 CAACATTCAGAAAGAATCGACACTCCATTTGGTTTTA 5272 Score = 107 bits (118), Expect = 3e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| |||| || ||||| || ||||| || || || || || ||| || Sbjct 5288 ATGCAAATATTTGTTAAGACTTTGACCGGCAAAACCATCACTTTGGAGGTAGAATCATCG 5347 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| |||||| ||| ||||| || || || ||||| || |||||||| || Sbjct 5348 GATACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCAG 5407 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | ||| || |||||| | |||||| | || || || ||||| || Sbjct 5408 CAGCGTTTGATCTTTGCTGGAAAGCAGTTGGAAGATGGGCGCACATTGTCGGATTACAAC 5467 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 ||| || || | || | ||||| ||||| Sbjct 5468 ATACAAAAGGAATCCACATTGCATTTGGTGTT 5499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731651788863600