Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq4549 159 7e-34 seq4550 147 4e-30 seq23389 136 8e-27 seq9454 131 3e-25 seq11312 125 1e-23 >seq4549 Length=20005 Score = 159 bits (176), Expect = 7e-34 Identities = 175/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||||||| || ||||| || || | ||| || ||||| |||||| Sbjct 19708 ATACCACCGCGTAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCA 19649 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || || ||| | || |||||||| || |||||||| || || | || ||||| || Sbjct 19648 GACAAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGG 19589 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| |||||| || ||||| |||| ||| || | ||| Sbjct 19588 GGAATACCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCGATAGTATCCGATGGTTCA 19529 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||||| | |||||| ||||| |||||||||||||| | ||| || |||||||| Sbjct 19528 ACTTCCAAAGTAATAGTTTTGCCAGTTAATGTTTTTACAAAGATTTGCATTTT 19476 >seq4550 Length=29190 Score = 147 bits (162), Expect = 4e-30 Identities = 173/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | | |||||| || ||||| | || | ||||| || || || || Sbjct 5289 ATACCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCG 5230 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||| || ||| ||||| ||||| ||||||||||| || | ||||||||| ||| Sbjct 5229 GAGAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGTTGATCTGGT 5170 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || | ||||||||||||||| |||||| |||| ||||| |||| ||| || | || Sbjct 5169 GGGACTCCTTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCA 5110 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTA 192540 || || | || || ||||| ||||| ||||| || | || |||||||||||| Sbjct 5109 ACCTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATTTTA 5056 Score = 132 bits (146), Expect = 9e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| || || ||||| || || | || || || || ||||| Sbjct 5745 ATTCCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCC 5686 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| || |||| ||||| ||||| ||||||||||| || | ||| || || || Sbjct 5685 GACAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGA 5626 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || ||||| ||| || || |||| || |||| ||| Sbjct 5625 GGAATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCC 5566 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || | |||||| ||||| ||||| || ||||||| |||||| |||||| Sbjct 5565 ACCTCCAAAGTAATCGTTTTCCCAGTCAAAGTTTTAACAAATATTTGCATT 5515 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 192319 AGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGT 192378 ||||| || || || || | ||||| || || || || ||||| || ||||| || Sbjct 5961 AGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGC 5902 Query 192379 TCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCT 192438 |||| ||||| ||||| ||||||||||| || | ||| || || || || || ||||| Sbjct 5901 CCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCC 5842 Query 192439 TTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTA 192498 || || || ||||| ||| || || |||| || |||| ||| ||||| | ||| Sbjct 5841 TTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCACTTCCAAAGTG 5782 Query 192499 ATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || ||||| ||||| || ||||||| |||||| |||||| Sbjct 5781 ATCGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCATT 5743 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | ||||| || || ||||| || || | || || || || ||||| Sbjct 5517 ATTCCACCACGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCC 5458 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || ||||| || |||| ||||| || || ||||||||||| || | ||| || || || Sbjct 5457 GACAATGTGCGCCCATCTTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGA 5398 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || ||||| ||| || || |||| ||| || |||||| Sbjct 5397 GGAATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCT 5338 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | ||| |||||||| || || || || |||| |||||| ||||| Sbjct 5337 ACCTCCAAAGTGATGGTTTTGCCGGTCAAAGTCTTAACAAATATTTGCAT 5288 >seq23389 Length=58516 Score = 136 bits (150), Expect = 8e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||||| | ||| | || | |||||| || | ||||| ||||||||||| || Sbjct 44402 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 44461 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 ||||| || |||| |||||||| || ||||| || || |||| ||| || || ||||| Sbjct 44462 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCGGGTGGA 44521 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 ||||| ||||| || || || || ||||||||| |||| || || | ||| || Sbjct 44522 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCAATAGTGTCCGAGGGTTCGACC 44581 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| ||||| || || |||| ||||| | ||| |||||||| || Sbjct 44582 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 44631 >seq9454 Length=16677 Score = 131 bits (144), Expect = 3e-25 Identities = 421/648 (65%), Gaps = 27/648 (4%) Strand=Plus/Minus Query 49637 CAATACATATAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATT 49696 |||| | ||| || | |||||| ||| |||| | ||||| |||| ||||| || Sbjct 13723 CAATTCTAATAGCAAACGATCGGCAACATATTCTATATATTTACACATACTTTCACTGTT 13664 Query 49697 CATACCCAATAATTTAAATGGTAATGCATCA-TCAATAAATTCtttttctatttctacag 49755 ||| || | ||| | | |||||| || || |||| ||| |||||||| |||| ||| | Sbjct 13663 CATGCCAATTAAGTCGACTGGTAAGGCTTCTGTCAA-AAACTCTTTTTCAATTTTTACGG 13605 Query 49756 cttgtttaattat--cataattatattattttttgataatttatatttaatatgattcgc 49813 | | | ||||| | || | || ||| | ||| |||| ||| | || Sbjct 13604 CATCAGTTATTATTTCCAAAATCCGTTCTTTACTCGGTTTTTGTATTAAATGT--TT--- 13550 Query 49814 atatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACT 49873 | | |||| ||||| ||| || || || || || | ||||| | ||||||| Sbjct 13549 AAACATTAGTACCGCAAATTCACAGTGCAAGCCTTCATCACGTGATATCATTTCATTAGA 13490 Query 49874 AAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACT 49933 || ||||| |||||||||| ||| | || || ||||||||||| || || || || | Sbjct 13489 GAATGTTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTGCC 13430 Query 49934 AGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTT 49993 | |||||| ||||| |||||| || || ||||| || | | ||||| |||| Sbjct 13429 ACTAAAGAAAATACCTTCGACAGCAGCGAAAGCTATGATACGCTCGCCAAA-ATTAGCCG 13371 Query 49994 A-TCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTT 50052 | | | ||||||| || |||||| || || || || || | | || || | | Sbjct 13370 AATGCGATGATATCCATGCTAGAGCCCATTCGGCCTTCTTCTTAACCAATGGCATTGTCT 13311 Query 50053 CTATAGCTTTAAATA---ATTCA---tttttttCATNNNNNNNNNNNNNNNNNNNNNNNA 50106 | || || ||||| | ||||| | ||| |||| | Sbjct 13310 CAATGGCATTAAAGAGATATTCACGTTCTTTCTCATCCATGATATATGTTTCG------A 13257 Query 50107 TTAATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATT 50166 | | || | ||||||||| ||||| ||| |||||| || |||||||| ||||| Sbjct 13256 TAAGTAGACTATACATTTCCGAATGCACATTTTCCATGGCAATTTGAAAACCGTAAAAGC 13197 Query 50167 GTCTTGCTTCTGAATACTGAACTTC--GGAAAAGAATCGTTCAACTAAATTCTCAGATAC 50224 | ||||| | ||||| || || ||| ||||||| |||||||||||| || Sbjct 13196 AACGAGCTTCAGTTATTTGAACCTCTTGGGAAA--ATCGTTCCACTAAATTCTCATTAAC 13139 Query 50225 AATACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATG 50272 ||||||||| ||||| || || || || ||||| | | ||||||||| Sbjct 13138 AATACCATCGGATGCCGCAAAAAAAGCCAAAACATGTGAAATAAAATG 13091 >seq11312 Length=46762 Score = 125 bits (138), Expect = 1e-23 Identities = 170/237 (72%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 192303 AATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATA 192362 ||| || ||||| | ||||| | ||| || || || || | ||| || || || || Sbjct 38389 AATTATGCCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTGTA 38330 Query 192363 ATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATC 192422 || ||||| || ||| |||| |||||||| || ||||| || || || | |||||||| Sbjct 38329 GTCGGATAACGTGCGTCCATCTTCCAATTGCTTGCCAGCGAAAATCAAACGTTGTTGATC 38270 Query 192423 AGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGA 192482 || || || ||||||||||| || ||||| || ||||| |||| || || | Sbjct 38269 TGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGG 38210 Query 192483 TTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| | |||||| ||||| ||||| | ||||||| || || |||||||| Sbjct 38209 CTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTT 38153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984176376830850