Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq14689 86.0 2e-11 seq14276 86.0 2e-11 >seq14689 Length=1457 Score = 86.0 bits (94), Expect = 2e-11 Identities = 156/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 289023 TTTTTTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 ||| ||||| | |||||||| || ||||| || | | |||||||| |||| | | || Sbjct 840 TTTCTTACCGATGGCATCAATCTCATCAATAAACACGATACACGGAGCTTTTTCTTTGGC 899 Query 289083 AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTC 289142 | ||| | || | || ||||| || | || ||| ||||||| |||||||| Sbjct 900 CTGTTTAAAGAGGTCACGAACCTTCGATGCACCCATGCCGACAAACATTTCCACAAATTC 959 Query 289143 AGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAA 289201 |||| |||| | | || | || | || || | ||| || ||||| ||| | ||||| | Sbjct 960 AGAACCGGACA-TGGAGAAAAACGGCACGTTGGATTCTCCGGCTACCGCCTTTGCCAGCA 1018 Query 289202 GTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGG 289247 |||||||||||||| || || || | | | ||| ||||| || Sbjct 1019 TGGTCTTACCTGTTCCGGGAGGACCTACAAGCAAAACACCCTTCGG 1064 >seq14276 Length=25181 Score = 86.0 bits (94), Expect = 2e-11 Identities = 115/157 (73%), Gaps = 11/157 (7%) Strand=Plus/Plus Query 303627 TTGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCTTTGTGTC 303686 ||| || | ||| ||||||||||||||||| |||||||| ||||| || || || Sbjct 15368 TTGCGGTACATGCAAATTCATCTCATCACCATCAAAATCTGCATTGTATGGGGAAGTACA 15427 Query 303687 CGCAACGTTCATCCGGAAAGTATCACCCT-GCATCA---TAACACGGGCTTTATGACACA 303742 | | ||||| ||||| ||| ||| | ||| || ||||||| ||||| || Sbjct 15428 AGATAAATTCATACGGAATGTA-GACCATGGCAACACTTTAACACG------ATGACCCA 15480 Query 303743 TCATAGACATTCTGTGTAGAGTTGGCTGACGATTGAA 303779 ||||| |||| |||| ||||| |||||||||||||| Sbjct 15481 TCATACTCATTTTGTGCAGAGTAGGCTGACGATTGAA 15517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471363677193927