Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq14407 132 4e-26 seq4550 100 2e-16 seq4549 87.8 1e-12 seq11312 86.0 5e-12 >seq14407 Length=25941 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34203 CGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATA 34262 ||| || ||||||| ||| | || || | |||||| || | ||| ||| ||| | Sbjct 22025 CGGTGGATTTTTCAAAATGTAAGTATTCACCTTATGATTGACCTTAAGCAAGCCATGAAA 22084 Query 34263 ACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCAGT 34322 ||||||||||| || ||| | ||| | | || |||| || || | || ||||| Sbjct 22085 TCCGCATGCTTTACAAGACTGCGATATAGTTTGATTCCTAGCTGAAACTGTAAGATCAGT 22144 Query 34323 CTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGGTC 34382 ||||| || || ||||| ||||| || ||||| ||||| || ||||||||||| || || Sbjct 22145 TTCCGGATTATCGCATTCAGGACATAAGACAAATTTGCGTATAAAACCATCAAGGAGATC 22204 Query 34383 CTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTT 34430 ||||| ||| | | |||||||||||| || || ||||| || ||||| Sbjct 22205 TTGTAATTTAGCTGCGTCGTGGGAGCCATTAACAATGAAACGGTCGTT 22252 Score = 107 bits (118), Expect = 2e-18 Identities = 151/210 (72%), Gaps = 4/210 (2%) Strand=Plus/Plus Query 34437 ATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGG 34496 ||| | ||| ||||| || |||| || || || ||||| || || || ||| |||| || Sbjct 22342 ATCAAGCTGAGTTTGAGCACCCAATTCACAACCAAAGTATTTGGTTGGATAAGTGGCTGG 22401 Query 34497 ACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCC 34556 ||||| | || || | ||||| ||| || || || || || || ||||| ||||| Sbjct 22402 TCGTCCTATGGCTCGTGCCACTTCGGCCATATTAACTATAACCGTTTTAATGCCATTGCC 22461 Query 34557 CTTTCCTTCGACCTTGGC--GCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCC 34614 || |||||||| ||||| ||| | |||||||||||||| || ||||| || | Sbjct 22462 TTTACCTTCGACTTTGGCTTGCAAA--CGCGGCATTTTGTAACGATAGAAAATATCGGTG 22519 Query 34615 ACATTGCGGTTAACGTTCACAGTCCCCATC 34644 ||||| ||||| || || || | |||||| Sbjct 22520 ACATTACGGTTCACATTAACCGAACCCATC 22549 >seq4550 Length=29190 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||||||||| |||||||| || || ||||| ||||| | || ||| || Sbjct 5515 AATGCAAATATTTGTTAAAACTTTGACTGGGAAAACGATTACTTTGGAGGTGGAACCGTC 5574 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || ||| ||| | || ||| || || ||||| ||||| | || || || Sbjct 5575 GGACACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCA 5634 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || | | || | ||| || |||||| |||| |||| | ||| || |||||||||| Sbjct 5635 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCGGATTACAA 5694 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||| ||||| ||||| || ||||| ||||||| | || || || |||| Sbjct 5695 CATACAAAAGGAATCCACATTGCATTTGGTGTTGCGTCTCCGCGGTGGAA 5744 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||||||||| |||||||| || || ||||| || || | ||| ||| || Sbjct 5743 AATGCAAATATTTGTTAAAACTTTGACTGGAAAAACGATCACTTTGGAAGTGGAACCGTC 5802 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || ||| ||| | || ||| || || ||||| ||||| | || || || Sbjct 5803 GGACACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCA 5862 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || | | || | ||| || |||||| |||| |||| | ||| || |||||||||| Sbjct 5863 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCGGATTACAA 5922 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 ||| ||||| |||||||| | ||| ||||||| Sbjct 5923 CATACAAAAGGAATCTACTCTTCACTTGGTGTT 5955 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 110267 TTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG 110326 ||||||||||| || || || || || || || || ||||| || ||| | || ||| Sbjct 5054 TTTAAAATGCAGATCTTCGTGAAGACATTGACTGGGAAAACTATCACCTTGGAGGTTGAG 5113 Query 110327 CCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTG 110386 || ||||||| | | | || ||| || ||| || |||||||| || || Sbjct 5114 CCATCCGATACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAAGGAGTCCCACCA 5173 Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446 |||||||| | | || | ||| || |||||| |||| ||| | | ||| | | || Sbjct 5174 GATCAACAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCCGAC 5233 Query 110447 TACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||||||||| |||||||| || | || |||| ||| | |||| || || Sbjct 5234 TACAACATTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGG 5286 >seq4549 Length=20005 Score = 87.8 bits (96), Expect = 1e-12 Identities = 168/247 (68%), Gaps = 3/247 (1%) Strand=Plus/Plus Query 110256 TTTATAAGAGATTT---AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTA 110312 ||| | | |||||| ||||||||||| ||||| ||||| ||||| |||||||| |||| Sbjct 19459 TTTTTGACAGATTTTAAAAAATGCAAATCTTTGTAAAAACATTAACTGGCAAAACTATTA 19518 Query 110313 CCGTCGAAACGGAGCCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAG 110372 | | ||| || || |||||| ||| | || || || ||| ||||| | Sbjct 19519 CTTTGGAAGTTGAACCATCGGATACTATCGAAAATGTTAAGGCTAAAATTCAAGACAAGG 19578 Query 110373 AAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCA 110432 |||| | ||| ||||| ||| | | |||| ||| || || || |||| || | Sbjct 19579 AAGGTATTCCCCCAGATCAGCAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGAC 19638 Query 110433 GAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGC 110492 | || || | |||||||| ||||| || || || || ||||| |||| || | || | Sbjct 19639 GCACCTTGTCTGATTACAATATTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTCTAC 19698 Query 110493 GAGGGGG 110499 | || || Sbjct 19699 GCGGTGG 19705 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || |||||||| || || ||||| ||||| ||| | ||| |||||| | Sbjct 19707 ATGCAAATTTTCGTCAAAACATTGACTGGCAAGACCATCACCCTAGAAGTCGAGCCTTCC 19766 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || || ||| ||||| ||||| | ||| ||||| Sbjct 19767 GACACCATTGAAAACGTCAAGGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 19826 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | | |||| ||| || || || |||| || | | || | | ||||||||| Sbjct 19827 CAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCCTATCTGATTACAAC 19886 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| || || || ||||| |||| || | ||||| || || Sbjct 19887 ATTCAAAAGGAGTCGACATTGCATTTGGTCCTACGTCTGCGCGGTGG 19933 >seq11312 Length=46762 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 ||||||||||| || || |||||| | || |||||||| ||||| | ||| |||||| Sbjct 38153 AAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCT 38212 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| ||| | | | || || || ||| || ||||||||| | || ||| Sbjct 38213 TCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGAT 38272 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 |||||| | | |||| || || || || |||| |||| | || | | || ||| Sbjct 38273 CAACAACGTTTGATTTTCGCTGGCAAGCAATTGGAAGATGGACGCACGTTATCCGACTAC 38332 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||| ||||| || || || |||||| |||| Sbjct 38333 AACATACAAAAGGAGTCGACCTTGCACTTGGT 38364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412720486595003