Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq11312 86.0 5e-12 seq4550 84.2 2e-11 >seq11312 Length=46762 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/216 (69%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||||||||| || |||||| | || |||||||| ||||| | ||| ||| || Sbjct 38153 AAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCT 38212 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||| ||| | | | || || || ||| |||||||||||| | || ||| Sbjct 38213 TCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGAT 38272 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGA 107728 || || | | |||| || || || || |||| |||||| || | | || Sbjct 38273 CAACAACGTTTGATTTTCGCTGGCAAGCAATTGGAAGATGGACGC----ACGTTATCCGA 38328 Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||||| ||||||||||| || |||||| |||| Sbjct 38329 CTACAACATACAAAAGGAGTCGACCTTGCACTTGGT 38364 >seq4550 Length=29190 Score = 84.2 bits (92), Expect = 2e-11 Identities = 172/255 (67%), Gaps = 7/255 (3%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| || ||||| || ||||||||||| || | || || | Sbjct 5288 ATGCAAATATTTGTTAAGACTTTGACCGGCAAAACCATCACTTTGGAGGTAGAATCATCG 5347 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| ||| | || ||| ||| || || || ||||| | || || ||| Sbjct 5348 GATACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCAG 5407 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | | || | ||| || || ||| |||| || | ||| || |||| |||||| Sbjct 5408 CAGCGTTTGATCTTTGCTGGAAAGCAGTTGGAAGATGGGCGCACATTGTCGGATTACAAC 5467 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAAATAATAAAAAT 107795 || |||||||| || || ||||| |||||||| | | || || || ||| |||| Sbjct 5468 ATACAAAAGGAATCCACATTGCATTTGGTGTTGCGTCTCCGTGGTGG----AATGCAAAT 5523 Query 107796 ATTTGTATTTAAAAC 107810 ||||| ||||||| Sbjct 5524 ATTTG---TTAAAAC 5535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398759783382919