Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq11312 120 5e-22 seq4549 118 2e-21 seq4550 114 2e-20 seq23389 105 1e-17 >seq11312 Length=46762 Score = 120 bits (132), Expect = 5e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || || ||||| |||||| | || || || | | || Sbjct 38157 TGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCTTCCG 38216 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| ||||||| || ||||| || ||||||||||||||| || ||||||| Sbjct 38217 ACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGATCAAC 38276 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | ||||| || || || ||||| || ||| | |||||| | || || || | Sbjct 38277 AACGTTTGATTTTCGCTGGCAAGCAATTGGAAGATGGACGCACGTTATCCGACTACAACA 38336 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTA 146240 ||||||| || ||||| | || || ||| Sbjct 38337 TACAAAAGGAGTCGACCTTGCACTTGGTA 38365 >seq4549 Length=20005 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || ||||||||||||| || ||||| |||||| | || || |||| | Sbjct 19480 TGCAAATCTTTGTAAAAACATTAACTGGCAAAACTATTACTTTGGAAGTTGAACCATCGG 19539 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||||||| ||||||| || |||||| ||| || ||||| ||||| || ||||| | Sbjct 19540 ATACTATCGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGATCAGC 19599 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | |||||||| || || ||||| || || | || || | ||||| |||| Sbjct 19600 AACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCTGATTACAATA 19659 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || || || ||||| | ||||| || |||| || | || |||| Sbjct 19660 TTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTCTACGCGGTGGTA 19707 >seq4550 Length=29190 Score = 114 bits (126), Expect = 2e-20 Identities = 168/238 (71%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || ||||| || || ||||| || || | || || || | || Sbjct 5061 TGCAGATCTTCGTGAAGACATTGACTGGGAAAACTATCACCTTGGAGGTTGAGCCATCCG 5120 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | ||||| |||| |||||| ||| ||||||||| | ||||| ||||||| Sbjct 5121 ATACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAAGGAGTCCCACCAGATCAAC 5180 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | | | || ||||| || ||||| || || || | || | | || || || | Sbjct 5181 AGCGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCCGACTACAACA 5240 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 | || ||||||||||| ||||||| || ||||| || | || |||| ||||||| Sbjct 5241 TTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGGTATGCAAATATT 5298 >seq23389 Length=58516 Score = 105 bits (116), Expect = 1e-17 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || ||||||| |||| || || || || ||| |||| || |||| | Sbjct 44627 TGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCCTCGG 44568 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| ||||||||||| || || || ||||| || ||||||||||| || | Sbjct 44567 ACACTATTGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGACCAGC 44508 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | ||||| || || || ||||| || ||| | || || | |||||||||| Sbjct 44507 AGCGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCCGATTATAATA 44448 Query 146212 TACAAAAAGAATCGAC 146227 | ||||||||||| || Sbjct 44447 TTCAAAAAGAATCCAC 44432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785929852357320