Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq23389 176 3e-39 seq4550 172 4e-38 seq4549 159 3e-34 seq11312 138 9e-28 seq181 87.8 1e-12 >seq23389 Length=58516 Score = 176 bits (194), Expect = 3e-39 Identities = 182/233 (78%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG- 29617 ||| || | |||||||||||| | ||| | ||||||||||||||||| |||||||| | Sbjct 44401 TCCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGA 44460 Query 29618 CAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCG 29677 |||| ||||| ||| || | ||| || ||||| | ||||||| ||||| || || | Sbjct 44461 CAAT-GTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCGGGTG 44519 Query 29678 GAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCT 29736 |||| ||||||||||| || ||| || | ||| ||| |||| | |||||| || |||| Sbjct 44520 GAATTCCCTCTTTGTCCTG-AATCTTGGCTTTTACATTTTCAATAGTGTCCGAGGGTTCG 44578 Query 29737 ACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || |||||||| || || ||||| |||| |||||| ||||| |||||||| || Sbjct 44579 ACCTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 44631 >seq4550 Length=29190 Score = 172 bits (190), Expect = 4e-38 Identities = 177/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-C 29618 ||||| | | ||||| |||||| ||||| || ||||| ||||| ||||| ||||||| | Sbjct 5970 CCTCCGCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCCGAC 5911 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 |||| |||| ||| || | |||||||||||| | ||||| | ||||| || || || Sbjct 5910 AATG-TGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 5852 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||| || ||||| || | |||| ||| || |||| | |||||| || |||| || Sbjct 5851 AATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCAC 5792 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||| | ||| || ||||| ||||| || |||||||||||||| |||||| Sbjct 5791 TTCCAAAGTGATCGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCATT 5743 Score = 165 bits (182), Expect = 6e-36 Identities = 169/218 (78%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAG 29629 ||||| ||||||||| | |||||||| ||||| ||||| ||||||| ||||| |||| Sbjct 5731 ACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGACAATG-TGCGCC 5673 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || | |||||||||||| | ||||| | ||||| || || |||||||| || | Sbjct 5672 CATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCT 5613 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||| || | |||| ||| || |||| | |||||| || |||| || || | ||| | Sbjct 5612 TGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCACCTCCAAAGTAA 5553 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | ||||| ||||| || |||||||||||||| |||||| Sbjct 5552 TCGTTTTCCCAGTCAAAGTTTTAACAAATATTTGCATT 5515 Score = 145 bits (160), Expect = 6e-30 Identities = 164/217 (76%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAG 29629 ||||| ||||||||| | |||||||| ||||| ||||| ||||||| ||||| |||| Sbjct 5503 ACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGACAATG-TGCGCC 5445 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || | || || |||||| | ||||| | ||||| || || |||||||| || | Sbjct 5444 CATCTTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCT 5385 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||| || | |||| ||| || |||| | ||| || || |||||| || | ||| | Sbjct 5384 TGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCTACCTCCAAAGTGA 5325 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | |||||||| || || || ||||||||||| ||||| Sbjct 5324 TGGTTTTGCCGGTCAAAGTCTTAACAAATATTTGCAT 5288 Score = 129 bits (142), Expect = 5e-25 Identities = 171/235 (73%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | |||||| | |||||||| || || |||||||| |||||||| || || | Sbjct 5286 CCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAG 5227 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| || || | |||||||||||| | ||||| | || ||||| || || Sbjct 5226 AGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGTTGATCTGGTGGG 5167 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGA-CAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 | || ||||| ||||| |||||| |||| | || | || | ||| || || | || || Sbjct 5166 ACTCCTTCTTTATCTTG-AATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAAC 5108 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAA 29793 || | || |||||||| ||||| || || || || || ||||||||||||||| Sbjct 5107 CTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATTTTAAAA 5053 >seq4549 Length=20005 Score = 159 bits (176), Expect = 3e-34 Identities = 169/220 (77%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || |||||||| | || || || || ||||| || ||||| | | |||||| Sbjct 19694 ACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCAGACAAGGTGCGTCC 19635 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || | ||| ||||||||| | ||||| | ||||||||| || |||||||| || || Sbjct 19634 GTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTT 19575 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| |||||| | || ||| |||| | ||| || || |||| ||||| | ||| | Sbjct 19574 GTCTTG-AATTTTAGCCTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAA 19516 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 |||||||||||||||| ||||| ||||| || |||||||| Sbjct 19515 TAGTTTTGCCAGTTAATGTTTTTACAAAGATTTGCATTTT 19476 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || |||||||| | || || || ||||||||||| ||||| | Sbjct 19933 CCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAATCAGAT 19874 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || | ||| ||||||||| | ||||| | ||||||||| || ||| Sbjct 19873 AGGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGA 19814 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| || |||||||| |||||| | ||||| |||| | ||||| ||| | || || Sbjct 19813 ATACCTTCCTTGTCTTG-AATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGAC 19755 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| || || || || |||||||| || ||||| || || || ||||| Sbjct 19754 TTCTAGGGTGATGGTCTTGCCAGTCAATGTTTTGACGAAAATTTGCAT 19707 >seq11312 Length=46762 Score = 138 bits (152), Expect = 9e-28 Identities = 164/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| || | || || || ||||| ||||| || || | | ||||| Sbjct 38371 ACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTGTAGTCGGATAACGTGCGTCC 38312 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | ||| |||||||| | ||||| | ||| ||||| || ||||| || ||||| Sbjct 38311 ATCTTCCAATTGCTTGCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTT 38252 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 || || |||||| | |||||| |||| | |||||| ||| | || ||||| | ||| | Sbjct 38251 ATCCTG-AATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAA 38193 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||||||||||| | |||||||| || || |||||||| Sbjct 38192 TAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTT 38153 >seq181 Length=60274 Score = 87.8 bits (96), Expect = 1e-12 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 ||||| | |||||||| || || || | ||||| |||||||| ||| | |||| | Sbjct 37563 AAACGTAAAACCAAATGGAGAGTCGAGCCCTTTTGTATGTTATAGTCCATTAATGTGCAA 37622 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 ||| || || || ||||| || || ||||| | | |||| || || || || ||| Sbjct 37623 CCATCTTCCAGCTGCTTGCCGGCGTAAATCAAACGACGTTGATTTGGTGGGATGCCGTCT 37682 Query 29689 TTGTCTTGTAATTTTTGTTTGACA-GTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGT 29747 || | | ||| || |||| | ||||| | ||| || | |||| || || | ||| Sbjct 37683 TTATTCCG-AATCTTGGTTTTAATCGTTTCAATAGTATCGGTCGGTTCGACATCTAAAGT 37741 Query 29748 TATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || ||||| ||||| || || ||||||||||| Sbjct 37742 GATGGTATTTCCCGTTAACGTTTTCACGAAAATCTGCATTTT 37783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385106190049011