Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq4550 161 2e-34 seq4549 159 7e-34 seq23389 149 1e-30 seq11312 145 1e-29 seq21563 93.3 8e-14 >seq4550 Length=29190 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| | | ||||| || ||||| ||||||||||| || ||||| || ||||| || Sbjct 5971 ACCTCCGCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCCGA 5912 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | | | || ||||| | ||||| ||||||||||| | | || || |||||||| Sbjct 5911 CAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 5852 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| || || || |||||||| || ||||| || || || ||||| || Sbjct 5851 AATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCAC 5792 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||||||| ||||| || || ||||| || || |||||||| |||||| Sbjct 5791 TTCCAAAGTGATCGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCATT 5743 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | |||||| | ||| || || || || ||||||||||| || || || || | Sbjct 5288 TACCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGG 5229 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || | ||| | ||||| ||||||||||| | | ||||||||||| | Sbjct 5228 AGAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGTTGATCTGGTG 5169 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | | |||||| ||||||||||| || | ||| ||||| ||||| ||||| || || | Sbjct 5168 GGACTCCTTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAA 5109 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | ||||| || || || || || ||||| ||||| || || ||||||||| Sbjct 5108 CCTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATT 5059 Score = 147 bits (162), Expect = 4e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || || |||| || ||||| || ||||| || ||||| || | | | || Sbjct 5503 ACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCC 5444 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | || |||||||||||||| | | || || |||||||| || |||||||| Sbjct 5443 ATCTTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTT 5384 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || || |||||||| || ||||| || ||||| | |||||| |||||||| || Sbjct 5383 GTCCTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCTACCTCCAAAGTGAT 5324 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| ||||| ||||| |||||||| ||||| Sbjct 5323 GGTTTTGCCGGTCAAAGTCTTAACAAATATTTGCAT 5288 Score = 140 bits (154), Expect = 6e-28 Identities = 161/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || || |||| || ||||| || ||||| || ||||| || | | | || Sbjct 5731 ACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCC 5672 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | ||||| ||||||||||| | | || || |||||||| || |||||||| Sbjct 5671 ATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTT 5612 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || || |||||||| || ||||| || || || ||||| || |||||||| || Sbjct 5611 GTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCACCTCCAAAGTAAT 5552 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||| || || ||||| || || |||||||| |||||| Sbjct 5551 CGTTTTCCCAGTCAAAGTTTTAACAAATATTTGCATT 5515 >seq4549 Length=20005 Score = 159 bits (176), Expect = 7e-34 Identities = 175/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || || || |||| || || || ||||| ||||| ||||||| Sbjct 19707 TACCACCGCGTAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCAG 19648 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | |||||||| | ||| || |||||||| || | | ||| |||||||| | Sbjct 19647 ACAAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGG 19588 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| |||||||| || || || |||||||| || ||||| ||||| | Sbjct 19587 GAATACCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCGATAGTATCCGATGGTTCAA 19528 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 |||||||||| || || ||||| || || || |||||||| || |||||| || Sbjct 19527 CTTCCAAAGTAATAGTTTTGCCAGTTAATGTTTTTACAAAGATTTGCATTTTT 19475 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| || || || |||| || || || || || || || ||||||| Sbjct 19935 TACCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAATCAG 19876 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 |||| | | |||||||| | ||| || |||||||| || | | ||| |||||||| | Sbjct 19875 ATAGGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGG 19816 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| |||||||| || || || || |||||||| || || ||| || | Sbjct 19815 GAATACCTTCCTTGTCTTGAATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGA 19756 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | || || |||||||| ||||| || || || || || ||||| Sbjct 19755 CTTCTAGGGTGATGGTCTTGCCAGTCAATGTTTTGACGAAAATTTGCAT 19707 >seq23389 Length=58516 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| ||||||||| || | || | || |||||||| || ||||||||||| || Sbjct 44402 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 44461 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || ||||| | ||| |||||||| || || | || || || || || || Sbjct 44462 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCGGGTGGA 44521 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| || || || |||||||| ||||||||||||||||| || || ||||| || Sbjct 44522 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCAATAGTGTCCGAGGGTTCGACC 44581 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || |||||||| || | || |||||||| |||||||| Sbjct 44582 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 44628 >seq11312 Length=46762 Score = 145 bits (160), Expect = 1e-29 Identities = 167/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || ||||||| || || || || ||||| || || || |||| | | || Sbjct 38371 ACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTGTAGTCGGATAACGTGCGTCC 38312 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | ||| || ||||| || || | | ||||||||||||||| || ||||| || Sbjct 38311 ATCTTCCAATTGCTTGCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTT 38252 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||| ||||| || || || ||||||||||| || || ||| || ||||||||||| || Sbjct 38251 ATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAAT 38192 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATT 82819 || ||||| || | || || || || || |||||| ||||||| Sbjct 38191 AGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTTTATATT 38147 >seq21563 Length=118094 Score = 93.3 bits (102), Expect = 8e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 144079 TATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATAAACCTCTTATTT 144138 ||||||||||| | || | | | ||||| | || |||||| | || ||||| ||| | | Sbjct 107312 TATGCGATAATCTTCTTATGTGTGTAGTACGTGCTTGGGATTTGAAAAAACCGCTTTTAT 107371 Query 144139 TTTGCCCCGCTATGAATACCCTTATGTGGGAACATCCTATTACAGAAAAACATATAGATA 144198 ||||||| ||||||||||| | |||| || ||||| || ||| | || || ||| Sbjct 107372 TTTGCCCTGCTATGAATACACGCATGTATGATCATCCAATCACATCGGATCAAATTAATA 107431 Query 144199 CTTTAAAACATATGGGTTTCATAGAAATAGAATGTATAGaaaaaaaaCTAGCCTGTGGAG 144258 |||||| | ||| | | |||||| | |||||| |||| || ||||| | Sbjct 107432 AATTAAAATCTTGGGGCTACCACGAAATACCAAGTATAGCGAAAACTTTAATATGTGGTG 107491 Query 144259 ACGTAGGAAATGGTGCTATGGCAGAAGTT 144287 | || ||||| |||||||| |||||| Sbjct 107492 ATACTGGCAATGGGGCTATGGCCGAAGTT 107520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981524394980069