Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq23389 105 6e-18 seq4549 96.9 3e-15 seq4550 91.5 1e-13 >seq23389 Length=58516 Score = 105 bits (116), Expect = 6e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||||| |||||| ||||| || ||||| |||||| || ||| | | | || || | | Sbjct 44425 ATGTAAGGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGGCCA-TCTTCCAATT 44483 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || ||| |||| | |||||||||||||| || || || || ||||| |||| Sbjct 44484 GCTTTCCAGCGAAAATCAATCGCTGCTGGTCGGGTGGAATTCCCTCTTTGTCCTGAATCT 44543 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | || | | |||| ||||| | ||| || || || | |||| ||| ||||| | Sbjct 44544 TGGCTTTTACATTTTCAATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGTCTTGCCCG 44603 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || |||||||| ||||||||||| Sbjct 44604 TTAGGGTTTTTACAAAAATCTGCAT 44628 >seq4549 Length=20005 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | || ||||| || || || |||||||| | ||| ||| || | Sbjct 19912 AAATGCAATGTCGACTCCTTTTGAATGTTGTAATCAGATAGGGTGCGTCCGTCTTCCAAT 19853 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || |||| | || ||||| || || || || ||||||||||| ||| Sbjct 19852 TGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGTC-TTGAAT 19794 Query 133575 TTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| | ||||| | |||| ||||||| ||||| || || | ||||| ||| ||||| Sbjct 19793 TTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGACTTCTAGGGTGATGGTCTTGCC 19734 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| ||||| |||||||| ||||| Sbjct 19733 AGTCAATGTTTTGACGAAAATTTGCAT 19707 >seq4550 Length=29190 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | ||||| || || ||||| |||||||| || ||| | || || | | Sbjct 5493 AAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCATCTTCCAAC 5434 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || | || | ||||||||||| ||||| || ||||||||||| ||| Sbjct 5433 TGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGAT- 5375 Query 133575 TTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||||||| | | | || | || || | | || || || | |||| ||||||||| Sbjct 5374 TTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCTACCTCCAAAGTGATGGTTTTGCC 5315 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||||| ||| || || || || ||||| Sbjct 5314 GGTCAAAGTCTTAACAAATATTTGCAT 5288 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | ||||| || || ||||| |||||||| || ||| | || || | | Sbjct 5721 AAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCATCTTCCAAC 5662 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 || ||||| || | || | ||||||||||| ||||| || ||||||||||| ||| Sbjct 5661 TGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGAT- 5603 Query 133575 TTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||||||| | | | || | ||||| | || ||||| || | || | ||||| || Sbjct 5602 TTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCACCTCCAAAGTAATCGTTTTCCC 5543 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| |||||| || || || ||||| Sbjct 5542 AGTCAAAGTTTTAACAAATATTTGCAT 5516 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || || || || ||||| |||||||| || ||| | || || | ||| ||||| Sbjct 5940 GTAGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCATCTTCCAACTGTTTGCCA 5881 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | ||||||||||| ||||| || ||||||||||| ||| |||||||| Sbjct 5880 GCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGAT-TTTTGCTTT 5822 Query 133584 AGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | | || | ||||| | || ||||| || | |||| ||||| || |||| ||| Sbjct 5821 AACGTTTTCGATAGTGTCCGACGGTTCCACTTCCAAAGTGATCGTTTTTCCAGTCAAAGT 5762 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| || || || ||||| Sbjct 5761 TTTAACAAATATTTGCAT 5744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483275344724040