Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq17808 170 5e-37 seq15038 154 3e-32 seq18793 100 7e-16 seq14276 100 7e-16 seq5828 96.9 8e-15 >seq17808 Length=19168 Score = 170 bits (188), Expect = 5e-37 Identities = 331/481 (69%), Gaps = 11/481 (2%) Strand=Plus/Plus Query 110681 TGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGG 110740 |||||||||||| ||||| | | |||||| | ||| ||||| | |||||||| Sbjct 18518 TGGACTTGTTCCTATGTTGCGTCTTTTCAACAATGTTGCCCGTTATGTAGACCAAGGTGG 18577 Query 110741 TAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGA 110797 | || | | || | || ||||| ||| | ||||||||||| ||||||| || || Sbjct 18578 TGGGAAACGTCCGGGGGCTTTCGCTATATATTTAGAACCTTGGCACGCAGATATTTTCGA 18637 Query 110798 ATTCTTAGAACTTCGTAAA-AATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTT 110856 ||| || ||||| ||| ||| ||| || ||| | | ||||| |||||||||| Sbjct 18638 ATTTCTA-AACTTGAAAAAGAATACGGGAAAGGAGGAAGACCGTGCACGGGATTTATTTT 18696 Query 110857 ATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATG-GCATGTGGTCT 110915 ||||| ||||||| ||||||||||||||||| | || | | ||| |||| |||||| Sbjct 18697 ATGCACTGTGGATACCAGATTTATTCATGAAAAGAGTAGAGGCTGATGAGCAT-TGGTCT 18755 Query 110916 CTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGAC 110975 || ||||| || ||| | ||||| | || || |||||| | | ||||| | Sbjct 18756 CTAATGTGCCCCCATAAATGCCCTGGCTTGGAAGAAGTTTATGGAGACAAATTTGATAAA 18815 Query 110976 CTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTT 111035 | || |||||||||| | || || || ||| ||| | ||||| || | Sbjct 18816 TTGTATATAAAATATGAAGACGAGGGTAAAGCGAATAAAACAATACAAGCTCGTGACTTG 18875 Query 111036 TGGTTCAAAATCCTTGAA--TCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAG 111093 |||||| ||| || | | ||||| || || ||||||||||| || | || |||| Sbjct 18876 TGGTTCGCAAT--ATGCAGCGCCCAAGTAGAGACCGGAACTCCTTACATGCTTTACAAAG 18933 Query 111094 ATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGT 111153 || | |||||||||| ||||||| |||| | || || || || | |||||| |||| Sbjct 18934 ATGCTTGTAATCGCAAAAGTAATCAACAGAATGTTGGCACTATAAAATGTAGTAACTTGT 18993 Query 111154 G 111154 | Sbjct 18994 G 18994 >seq15038 Length=36294 Score = 154 bits (170), Expect = 3e-32 Identities = 564/863 (65%), Gaps = 25/863 (3%) Strand=Plus/Minus Query 110306 TTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGA 110365 |||||| || |||||| | ||||| |||||||| | | || ||| | || | || Sbjct 6275 TTTTGGCTTTAAAACTTTAGAACGATCTTATTTATTAAAGATTAACGGCAAAATTGTGGA 6216 Query 110366 ACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGC 110425 || || ||||| ||||| | ||||| || ||||| ||||| || |||| ||| |||| Sbjct 6215 GCGGCCACAACATATGTTAATGCGTGTCGCTATTGGCATTCACGGCGATGACATTGAAGC 6156 Query 110426 TGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTAT--TCATGCTACTCCTACC 110483 | ||||||| |||| || | | || | | || | ||||||| | || || Sbjct 6155 GGCTATTGAAACTTATAATCTCAT--GTCGGAGGGTTACTTTACTCATGCTTCCCCAACT 6098 Query 110484 CTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAAC 110543 ||||| || | || | | ||||||| | || ||||| | ||| || Sbjct 6097 TTATTTGGTGCTGCTACCATACGTCCACAATTGTCGTCCTGCTTCTTGCTAACTATGCCG 6038 Query 110544 GATGATTCTATTGAAGGTATTTATGATG-CTCTTAAAGAAACTGCTCTTATTTCTAAAAA 110602 || || || ||||| |||||| |||| | || | | || |||| |||||||| Sbjct 6037 GAAGACTCCATTGATGGTATT-ATGAAGGCTGTAGACCAATGTGCTAAAATTTCTAAGTC 5979 Query 110603 CTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATA----TCG 110658 | || ||||| ||| | | ||||| || || ||||||| | || | | | Sbjct 5978 GGCCGGTGGAATAGGTCTAAATATTCATTGCATACGAGCAAAAGGGACTAAGACATCTTG 5919 Query 110659 CAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTG 110718 || || || | | || || || |||||||| ||||| | | |||||| | || Sbjct 5918 TAATAGTGACGTAT-CTG--AC-GGTCTTGTTCCTATGTTGCGTCTGTTCAACAATGTTG 5863 Query 110719 CAAAATATGTGAATCAAGGTGGTAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAAC 110775 | ||||| | ||||||||| | | | || | |||||||| || | || | Sbjct 5862 CCCGTTATGTCGACCAAGGTGGTGGAAAACGTCCGGGGGCTTTTGCTATATACTTAGAGC 5803 Query 110776 CTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTT-GAAGAA 110834 ||||||| ||||||| || ||||| || || || ||||| | || | || || Sbjct 5802 CTTGGCACGCAGATATTTTCGAATTTCTA-AATTTGAAAAAAAATACGGGTAAAGAGGAG 5744 Query 110835 CAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTT 110894 | | ||||| |||||||||||||| ||||||| | ||| | ||||||||| | ||| Sbjct 5743 GATCGTGCACGAGATTTATTTTATGCTCTGTGGATACCTGATCTGTTCATGAAAAGAGTT 5684 Query 110895 CAAGAAAATG-GCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGT 110953 | | ||| |||| |||||||| |||||||| ||| | ||||| | | ||| | Sbjct 5683 GAGGCTGATGAGCAT-TGGTCTCTAATGTGTCCCCATAAATGCCCTGGCTTGTGTGAAAT 5625 Query 110954 ATATGGAAAAGAGTTTGA-AGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCA 111012 |||||| | | ||||| ||| | |||| ||||| ||| | || ||||| || Sbjct 5624 TTATGGAGACAAATTTGATAGA-TTATACGTGAAATACGAAGACGAGGGCAAAGCGAACA 5566 Query 111013 AACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAAT-CACAAGTTGAAACTGGA 111071 || ||| ||||| || | |||||| ||| | | | | ||||| ||||| ||| Sbjct 5565 AAACAATAAAAGCTCGTGACTTATGGTTCGCAAT-ATGCAGTGCCCAAGTAGAAACCGGA 5507 Query 111072 ACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGA 111131 |||||||| || | || ||||| | || |||||| ||||||| |||| | || Sbjct 5506 ACTCCTTACATGCTTTACAAAGACGCTTGCAACCGCAAAAGTAATCAACAGAATGTTGGC 5447 Query 111132 ACAATTAAGTCTAGTAATTTGTG 111154 || || || | ||||| || || Sbjct 5446 ACTATAAAATGCAGTAACTTATG 5424 >seq18793 Length=72441 Score = 100 bits (110), Expect = 7e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 ||| | |||||| | || || || || |||||||||||||| ||| |||| | | ||| Sbjct 6266 GTTTTATTCAATCGCCAGCCCTCGCTTCATAAAATGTCTATTATGTGTCATCAGGCCAAG 6325 Query 305390 GTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGAT 305449 ||| || || || || || |||| | | ||||| |||||||||||||| ||| Sbjct 6326 GTACAGCCTCAGCGTACCTTCCGTTTTAATGAATGCGCTTGCACGCCTTATAATGCTGAT 6385 Query 305450 TTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 ||||| || ||||| |||||| ||||| |||| || Sbjct 6386 TTTGACGGGGATGAGATGAATTTGCATCTACCACA 6420 >seq14276 Length=25181 Score = 100 bits (110), Expect = 7e-16 Identities = 134/185 (72%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||||| ||| |||| | |||| | |||||| | || || | ||||| |||||| Sbjct 15547 AGACATTTACGTGATGATGACTTGGTTATATTCAATCGTCAGCCTACTCTGCACAAAATG 15488 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 |||||||| |||| || ||||| || | | | ||||| || | ||| || Sbjct 15487 AGTATGATGGGTCATCGTGTTAAAGTGTTGCCATGGTCTACATTCCGTATGAATTTAT-- 15430 Query 305426 GCTTGTACG---CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCT 305482 ||||||| || || ||||| ||||||||||| ||||| |||||| |||||||||| Sbjct 15429 -CTTGTACTTCCCCATACAATGCAGATTTTGATGGTGATGAGATGAATTTGCATGTACCG 15371 Query 305483 CAATC 305487 ||||| Sbjct 15370 CAATC 15366 >seq5828 Length=3152 Score = 96.9 bits (106), Expect = 8e-15 Identities = 87/107 (81%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 167248 CACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTAATTTA 167306 |||| ||||| |||||||| | |||| || |||||||| ||||||| ||||| |||| Sbjct 2305 CACCGGCATTGTCGAATTC-TCCGCAATAGTTTGGTGCAGAAAATAACGTAACCAATTGT 2247 Query 167307 CGATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACG 167353 || ||| ||| |||||||| ||||||||||| || | ||||||||| Sbjct 2246 CGTTTGGCAAAGAATTCATAGCCATCTTCAACGACCTGATGGGCACG 2200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186446775435231