Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq4550 154 1e-32 seq4549 136 3e-27 seq23389 131 1e-25 seq11312 93.3 3e-14 >seq4550 Length=29190 Score = 154 bits (170), Expect = 1e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | ||||||||| |||||||| || || ||||| || |||||||| ||||| Sbjct 5287 ACCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGA 5228 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||||||| | | ||||| ||||| || ||||| ||||||||||| |||||| | || Sbjct 5227 GAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGTTGATCTGGTGG 5168 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 || |||||||| || |||||| |||| ||||| || | || ||| || || | Sbjct 5167 GACTCCTTCTTTATCTTGAATTTT-AGTTTTAACATTCTCAATAGTATCGGATGGCTCAA 5109 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| ||||| || || || || || || ||||||||||| Sbjct 5108 CCTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCAT 5060 Score = 141 bits (156), Expect = 6e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| || | | ||| |||||||| || ||||| || ||||||||||||||||| | Sbjct 5972 CACCTCCGCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCCG 5913 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | | |||||| | || ||||| ||||| || ||||| |||||||||||||| ||| | | Sbjct 5912 ACAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 5853 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | |||||| ||||| ||||| || || ||| | || | ||||| | |||| Sbjct 5852 GAATACCTTCCTTGTCCTGGATTTT-TGCTTTAACGTTTTCGATAGTGTCCGACGGTTCC 5794 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||||||||| || || || ||||| ||||| || ||||| Sbjct 5793 ACTTCCAAAGTGATCGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 5744 Score = 138 bits (152), Expect = 7e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| ||||||||||| | ||| || ||||||||||||||||| || Sbjct 5742 CCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGAC 5683 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | |||||| | || ||||| ||||| || ||||| |||||||||||||| ||| | || Sbjct 5682 AATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 5623 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| ||||| ||||| || || ||| | || | ||||| | |||||| Sbjct 5622 ATACCTTCCTTGTCCTGGATTTT-TGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCAC 5564 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || |||||||| || || || ||||| ||||| || ||||| Sbjct 5563 CTCCAAAGTAATCGTTTTCCCAGTCAAAGTTTTAACAAATATTTGCAT 5516 Score = 136 bits (150), Expect = 3e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| ||||||||||| | ||| || ||||||||||||||||| || Sbjct 5514 CCACCACGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGAC 5455 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | |||||| | || ||||| || ||||| ||||| |||||||||||||| ||| | || Sbjct 5454 AATGTGCGCCCATCTTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 5395 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||| ||||| ||||| || || ||| | || | || || |||||| || Sbjct 5394 ATACCTTCCTTGTCCTGGATTTT-TGCTTTAACGTTTTCGATAGTATCCGATGATTCTAC 5336 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| ||||| || || || || || ||||| || |||||| Sbjct 5335 CTCCAAAGTGATGGTTTTGCCGGTCAAAGTCTTAACAAATATTTGCATA 5287 >seq4549 Length=20005 Score = 136 bits (150), Expect = 3e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||||| |||||||| | || ||| || || || |||||||| || Sbjct 19706 ACCACCGCGTAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCAGA 19647 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | |||||| |||| |||||||| || || |||||||||||||| ||||||||| | || Sbjct 19646 CAAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGG 19587 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| |||||| | | ||||| || | || || || ||| | Sbjct 19586 AATACCTTCCTTGTCTTGAATTTT-AGCCTTAACATTTTCGATAGTATCCGATGGTTCAA 19528 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || ||||| || ||||| |||||||||||||| ||||| Sbjct 19527 CTTCCAAAGTAATAGTTTTGCCAGTTAATGTTTTTACAAAGATTTGCAT 19479 Score = 132 bits (146), Expect = 3e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||||| |||||||| | || ||| ||||| ||||||||||| || Sbjct 19934 ACCACCGCGCAGACGTAGGACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAATCAGA 19875 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || |||||| |||| |||||||| || || |||||||||||||| ||||||||| | || Sbjct 19874 TAGGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGG 19815 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| ||||| |||||| | | || | || | ||||||| | || | Sbjct 19814 AATACCTTCCTTGTCTTGAATTTT-AGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGA 19756 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || || ||||| || || || |||||| Sbjct 19755 CTTCTAGGGTGATGGTCTTGCCAGTCAATGTTTTGACGAAAATTTGCATA 19706 >seq23389 Length=58516 Score = 131 bits (144), Expect = 1e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| |||||| | ||| | ||||| ||| |||||||| || || |||||||| Sbjct 44402 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 44461 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | |||||| | || |||||||| ||||| || |||||||| |||||||| || | || Sbjct 44462 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCGGGTGGA 44521 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCAC 33701 | || |||||||| ||| || ||| | ||| ||| ||||| | ||| || Sbjct 44522 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTA-CATTTTCAATAGTGTCCGAGGGTTCGAC 44580 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| ||||| || || || |||| ||||||||||| ||||||||| Sbjct 44581 CTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATA 44629 >seq11312 Length=46762 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| |||||||||||||| ||||| | |||||| | || |||||||| || || || || Sbjct 38347 CTCCTTTTGTATGTTGTAGTCGGATAACGTGCGTCCATCTTCCAATTGCTTGCCAGCGAA 38288 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 ||||||||| || |||||| | || | |||||||| || |||||| | | |||| Sbjct 38287 AATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTT-GGCCTTGACAT 38229 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | |||||| | || || || | || || ||||| || || | ||||| | Sbjct 38228 TTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAA 38169 Query 33737 CAAAGATCTGCAT 33749 | || || ||||| Sbjct 38168 CGAAAATTTGCAT 38156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328607569648320