Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq4550 131 4e-25 seq23389 96.9 8e-15 seq11312 95.1 3e-14 seq4549 86.0 1e-11 >seq4550 Length=29190 Score = 131 bits (144), Expect = 4e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| ||||| | || ||||||||||||||||||||||||||| || ||| Sbjct 5747 CAAATATTTGTTAAAACTTTGACTGGAAAAACGATCACTTTGGAAGTGGAACCGTCGGAC 5806 Query 206233 ACAGTCG-AATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || ||| || | |||||||||| || || || || ||||| ||| || ||| || Sbjct 5807 ACTATCGAAAACGTTAAAGCAAAA-ATCCAGGACAAGGAAGGTATTCCTCCAGACCAGCA 5865 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | ||||| || || || |||||||||||||| | || ||| | ||||||||| | Sbjct 5866 GCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCGGATTACAACAT 5925 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || |||||||||||| | || ||| | || || Sbjct 5926 ACAAAAGGAATCTACTCTTCACTTGGTGTTGCGTCTCCG 5964 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| ||||| | || || |||||||| |||||||| |||||| || ||| Sbjct 5519 CAAATATTTGTTAAAACTTTGACTGGGAAAACGATTACTTTGGAGGTGGAACCGTCGGAC 5578 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || ||||| || ||||||||| || || || || ||||| ||| || ||| || Sbjct 5579 ACTATCGAAAACGTTAAAGCAAAA-ATCCAGGACAAGGAAGGTATTCCTCCAGACCAGCA 5637 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | ||||| || || || |||||||||||||| | || ||| | ||||||||| | Sbjct 5638 GCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCGGATTACAACAT 5697 Query 206352 CCAGAAAGAGTCTAC 206366 || || || || || Sbjct 5698 ACAAAAGGAATCCAC 5712 Score = 93.3 bits (102), Expect = 1e-13 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| || || | || || ||||| ||||||||||| || ||| || || Sbjct 5291 CAAATATTTGTTAAGACTTTGACCGGCAAAACCATCACTTTGGAGGTAGAATCATCGGAT 5350 Query 206233 ACAGTCG-AATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || ||| || | |||||||||| || || || || ||||| ||| || ||| || Sbjct 5351 ACTATCGAAAACGTTAAAGCAAAA-ATCCAGGACAAGGAAGGTATTCCTCCAGACCAGCA 5409 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | ||||| || |||||||||||||||||||| | || ||| | ||||||||| | Sbjct 5410 GCGTTTGATCTTTGCTGGAAAGCAGTTGGAAGATGGGCGCACATTGTCGGATTACAACAT 5469 Query 206352 CCAGAAAGAGTCTAC 206366 || || || || || Sbjct 5470 ACAAAAGGAATCCAC 5484 >seq23389 Length=58516 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || || || |||||| | || || ||| || ||| Sbjct 44625 CAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCCTCGGAC 44566 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| ||||| |||||||| || ||||| |||||| || ||| || Sbjct 44565 ACTATTGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGACCAGCAG 44506 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | || ||||| |||||||| ||||||||||| | || ||| ||||||| || | Sbjct 44505 CGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCCGATTATAATATT 44446 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 || ||||| || || | || ||||| Sbjct 44445 CAAAAAGAATCCACCTTACATCTTGT 44420 >seq11312 Length=46762 Score = 95.1 bits (104), Expect = 3e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| || ||||||||||| || ||| ||||| | ||| Sbjct 38171 AAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCTTCCGACACTATTGAAAAT 38230 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || ||||| || |||||||| ||| || || ||| | | || ||| Sbjct 38231 GTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGATCAACAACGTTTGATTTTC 38290 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| |||||||||||| | || || |||| |||||| | || || ||||| Sbjct 38291 GCTGGCAAGCAATTGGAAGATGGACGCACGTTATCCGACTACAACATACAAAAGGAGTCG 38350 Query 206365 AC 206366 || Sbjct 38351 AC 38352 >seq4549 Length=20005 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | || || ||||| || ||||||||||| ||| || || || ||||| Sbjct 19494 AAAACATTAACTGGCAAAACTATTACTTTGGAAGTTGAACCATCGGATACTATCGAAAAT 19553 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || |||||||| || ||||| ||| || || ||| | | || || Sbjct 19554 GTTAAGGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGATCAGCAACGTTTGATTTTT 19613 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| |||||||| ||| | || ||| | |||||||| | ||||| ||||| Sbjct 19614 GCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCTGATTACAATATTCAGAAGGAGTCG 19673 Query 206365 AC 206366 || Sbjct 19674 AC 19675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181456315016391