Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq15038 165 8e-36 seq4550 129 6e-25 seq11312 116 4e-21 seq17808 95.1 1e-14 seq181 91.5 1e-13 >seq15038 Length=36294 Score = 165 bits (182), Expect = 8e-36 Identities = 862/1343 (64%), Gaps = 72/1343 (5%) Strand=Plus/Plus Query 146680 TTAAACGATTGGCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCATGCGT 146739 ||||| ||||||||||| || || ||||| ||| || | ||||| | | ||| Sbjct 4584 TTAAATGATTGGCTTTGGTCGATAAAAGCTCCGCGATCAACAGCCATGT---TGATGG-- 4638 Query 146740 TTTGTCTTCA------TTTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGAATA 146793 ||| ||||| |||||||| | ||||| || | | || | ||| || || || Sbjct 4639 -TTGACTTCACCGAAATTTCCCAAACTGTTTTATATAATTCTTTTATGCTTTCAGGTATG 4697 Query 146794 CCTTCAATGTTTTGAATAGAGCCCTTGTGCGCAAAAAT--AGTGTTTCGTATT-TCGGGC 146850 |||| |||||||| || ||||| || || || || ||| |||| | || || | Sbjct 4698 GCTTCGATGTTTTGTATTGAGCCGCGATGTGCCAATATTAAGTTTTTCATGTTATCATTC 4757 Query 146851 GTGTAAAGGTTTAGTTTAATGAGGTCATCAATTAAATACTGATTGACCACTTGAAACTCG 146910 ||||| | || | | | || | || |||| |||||||| || |||||| Sbjct 4758 C---AAAGGCCCAATTCAGTCAAATCTTTAAGCAAATGATGATTGACTACGATAAACTCA 4814 Query 146911 CCCGCCAGCACACGTC-TGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATT 146969 || | ||| || |||| || | || | || ||| | |||||||||||||| || || Sbjct 4815 CCAGACAGTACGCGTCGTGTG-TAAATGTTTGAAGTATACGGCTCAAAAGACTCGTTGTT 4873 Query 146970 GCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAG 147029 || | ||||| || || | || |||||||| || |||| ||| ||||| |||| Sbjct 4874 ACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAGCTACCAGCAAAGAATTGCGCAC 4933 Query 147030 ACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCACATCGACGAG--GGCGTC 147087 || || |||| ||| || | || ||| | ||| | ||| || ||||| Sbjct 4934 TCCACACCTTTTAATGTCGTCTTTAAGAGCGGACCAATTCCATA--GACCAGTAGGCGTT 4991 Query 147088 ACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTG 147147 | |||||| || || || || | ||| ||| | ||||| || | | || | Sbjct 4992 TTATCCCACATATCATATTGAAGGATACCTTTACTAACTGGACTACCTTCATATGTTTCG 5051 Query 147148 TAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTT 147207 || |||| | | ||||||||||| || || || | || || || ||||| ||| Sbjct 5052 TACGGACCGTATAGTTTGGCCAATTCACAACTAGCTTCTAAGGCACCGTAATATATTGTT 5111 Query 147208 TCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGC 147267 || |||||||| |||| | | || | |||||| ||||| || ||||| | Sbjct 5112 TCAAAAATTTGTTTATTTAAGCGTGCAGCATTTTCGCTTTCGTAGGGATAACGCATTAAA 5171 Query 147268 ACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATGCTT----TTCG-- 147321 | | || || || || || |||| || | || || || ||||| || | Sbjct 5172 ATTAGTGCGTCAGCAAATCCTTGGACGCCTAAACCAATTGGACGATGACGAAAATTAGAC 5231 Query 147322 TTGCTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTA 147381 || ||| | ||| || || ||||| |||| ||| ||| || || |||||||| || Sbjct 5232 TTTCTG-GTTTC-CG---GCAATGGG-TAGTAATTGATATCGATTATTTTGTTGAGATTC 5285 Query 147382 CGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAA-GTCCCGTCTTCGAC 147440 | || || || | | | ||||||||| | |||||||| || | ||| Sbjct 5286 CTTGTTATAAGCTTTGCAACTTCTTTGAGTTTGTGAAAATCATATTGTTTATTTGTCGTT 5345 Query 147441 ACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTC-GGCGT 147499 ||| || ||| || || || || ||||||||||| || || | ||||| | || Sbjct 5346 ACGAACATATT----CAACGCAATTGATGCCAGATTGCAAACTGCTATTTCTTCAGCCGA 5401 Query 147500 CGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAA-ATTTTGC 147558 || | || | |||||||| | || | ||| ||||||||||| | | |||| ||| || Sbjct 5402 CG-TATATTCGACGATTTCTGTACATAAGTTACTGCATTTTAT-AGTGCCAACATTCTGT 5459 Query 147559 TGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACT 147618 ||||| ||||| || ||||| ||||||||| | |||||||| || ||||| || ||| Sbjct 5460 TGATTACTTTTGCGGTTGCAAGCGTCTTTGTAAAGCATGTAAGGAGTTCCGGTTTCTACT 5519 Query 147619 TGCGTTTCAACG-ATA-----AACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAG 147672 || | || | ||| |||| || | ||| | ||| | | | | | Sbjct 5520 TGGG---CACTGCATATTGCGAACC-AT--AAGTCACGAGCTTTTA--TTGTTTTGTTCG 5571 Query 147673 C--GGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGG 147730 | |||||||| |||||| | |||| || | ||||| | ||| || || || Sbjct 5572 CTTTGCCCTCGTCTTCGTATTTCACGTATAATCTATCAAATTTGTCTCCATAAATTTCAC 5631 Query 147731 CAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATG-TCGTCCGCGTTAACGCGT 147789 | ||| || || | ||| |||||||| || ||||| ||| || || || | ||| | | Sbjct 5632 ACAAGCCAGGGCATTTATGGGGACACATTAGAGACCA-ATGCTCATCAGCCTCAACTCTT 5690 Query 147790 CGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCTTTGCAATCCTCG 147849 ||| |||||||| || | |||||| || || | | ||| || || | |||||| Sbjct 5691 TTCATGAACAGATCAGGTATCCACAGAGCATAAAATAAATCTCGTGC---ACGATCCTCC 5747 Query 147850 GC---GCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCA 147906 | ||| | || ||||||||| || | | || || |||||||| || || Sbjct 5748 TCTTTACCCGTATTTTTTTTCAAATTTAGAAATTCGAAAATATCTGCGTGCCAAGGCTCT 5807 Query 147907 ATGTAGACGGCCAGCGCACCTTTACGCTTT---CCGCCCTGGTCGACATGGCGCACCATG 147963 | ||| | || | || || ||| ||| || || |||||||||| || | | Sbjct 5808 AAGTATATAGCAAAAGCCCCCGGACGTTTTCCACCACCTTGGTCGACATAACGGGCAACA 5867 Query 147964 TTGTTAAACACGCGCACCATGGG 147986 ||||| |||| |||| ||| || Sbjct 5868 TTGTTGAACAGACGCAACATAGG 5890 >seq4550 Length=29190 Score = 129 bits (142), Expect = 6e-25 Identities = 164/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 |||||| || ||||||||||| | | || ||||| ||||||||||||||| | || Sbjct 5281 ACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAGAGTGT 5222 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || ||| | |||||| || | | |||| | ||||||||||||||| || | || Sbjct 5221 GCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGTTGATCTGGTGGGACTCC 5162 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAAC-TGTTCCACAGTATCGGTCGGCTCCACTTCGA 132080 ||||||||| | | |||| |||| ||| | || | |||||||| ||||| || || | Sbjct 5161 TTCTTTATC-TTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAACCTCCA 5103 Query 132081 CCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| ||||||| || || | ||| |||||||| Sbjct 5102 AGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCAT 5060 >seq11312 Length=46762 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| ||||| |||||||||||| | || || |||||| Sbjct 38364 ACCAAGTGCAAGGTCGACTCCTTTTGTATGTTGTAGTCGGATAACGTGCGTCCATCTTCC 38305 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | || || || | | || | ||| |||||||||||||| |||||||||||||| | Sbjct 38304 AATTGCTTGCCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGA 38245 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| || | | ||| | ||| |||| ||||| ||||| | || | ||||| Sbjct 38244 ATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTG 38185 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| |||||||| | |||||| ||||| Sbjct 38184 CCAGTAAGAGTTTTAACGAAAATTTGCAT 38156 >seq17808 Length=19168 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 148236 ATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAG 148295 ||| || ||||||||| | || |||||||| ||||||||||| | ||||| ||||| | Sbjct 18278 ATAAGTTTCAATAGCGGCCTCAATGTCGTCACCGTGAATGCCAATGGCGACACGCATCAA 18219 Query 148296 CATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAG 148355 ||| ||||||||||| || ||| || || ||||| | | ||| ||| | Sbjct 18218 CATATGCTGTGGTCGCTCCACAATTTTTCCATTAATCTTTAACAAATAAGACCGTTCTAA 18159 Query 148356 GGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCGCATCTAG 148415 |||||| | ||||| | |||||| |||||| | || ||| ||||||| || || Sbjct 18158 AGTTTTGAAGCCAAAAAAATTGTAACTAAAATCGCGATCATAAATAATGGCCGAATTCAG 18099 Query 148416 TGTCTCAGCATG 148427 | |||||||| Sbjct 18098 TCGATCAGCATG 18087 Score = 91.5 bits (100), Expect = 1e-13 Identities = 192/278 (69%), Gaps = 9/278 (3%) Strand=Plus/Minus Query 147346 GGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTT 147405 ||||||| ||| || || |||||||||||||| | || || || || | | | Sbjct 19168 GGATAGTAATTGACGTCGATTATCTTGTTGAGGTTTCTTGTTATAAGCTTTGTAACTTCT 19109 Query 147406 TTGAGTTTCTCGAAATCATAAGTCCCGTCT-TCGACACGTACGCATTGGTTCACGGCGAT 147464 || ||||| | |||||||| ||| || |||| | ||| |||| || || Sbjct 19108 TTCAGTTTGTGAAAATCATATTCTTTATCTGCCGTCACGAA--CAT--ATTCAACGCAAT 19053 Query 147465 AGACGCCAGATTGCAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGC 147523 || ||||||||||| || || | || || | || || || | || ||||| | | Sbjct 19052 TGAGGCCAGATTGCAAACTGCTATTTCATCAGCCGACG-AATATTCGACAATTTCTGTAC 18994 Query 147524 ACAGGTTGCTGCATTTTATGACTCCCAA-ATTTTGCTGATTGCTTTTCCGATTGCACGCG 147582 ||| ||| || |||||||| | | |||| ||| || ||||| ||||| ||||| || || Sbjct 18993 ACAAGTTACTACATTTTAT-AGTGCCAACATTCTGTTGATTACTTTTGCGATTACAAGCA 18935 Query 147583 TCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTG 147620 |||||| | |||||||| || |||||||| ||||| Sbjct 18934 TCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCTACTTG 18897 >seq181 Length=60274 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 131906 AAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGC 131965 || || ||||||||||| | | || | ||||| ||||| ||||| | | || | Sbjct 37563 AAACGTAAAACCAAATGGAGAGTCGAGCCCTTTTGTATGTTATAGTCCATTAATGTGCAA 37622 Query 131966 GAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCT 132025 |||||| ||||| || |||| || || | ||| |||||| ||| || ||||| ||| Sbjct 37623 CCATCTTCCAGCTGCTTGCCGGCGTAAATCAAACGACGTTGATTTGGTGGGATGCCGTCT 37682 Query 132026 TTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTC 132085 |||| ||| || ||| | | ||| | |||||||||||| || || || | || Sbjct 37683 TTATTCCGAATCTTGGTTTTAATCGTTTCAATAGTATCGGTCGGTTCGACATCTAAAGTG 37742 Query 132086 AGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || || || | ||||| | |||||||||||| Sbjct 37743 ATGGTATTTCCCGTTAACGTTTTCACGAAAATCTGCAT 37780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476467793647560