Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq11312 96.9 3e-15 seq4550 91.5 1e-13 seq4549 91.5 1e-13 >seq11312 Length=46762 Score = 96.9 bits (106), Expect = 3e-15 Identities = 169/244 (69%), Gaps = 3/244 (1%) Strand=Plus/Plus Query 106229 TAATA-CGTTTGTCAT--TTATAAGAGTTTAAAAATGCAAATTTTTGTTAAAACATTGAC 106285 ||||| ||||| || | || | ||| | |||||||||||||||| |||||||| | || Sbjct 38122 TAATAACGTTTTTCTTAATTTTTAGAATATAAAAATGCAAATTTTCGTTAAAACTCTTAC 38181 Query 106286 TGGCAAGACCATTACCGTGGAAACAGAACCCGGCGATTCTGTTGGCCAAGTGAAACAAAA 106345 |||||| || ||||| ||||| || || ||| || ||| | || || || Sbjct 38182 TGGCAAAACTATTACTTTGGAAGTTGAGCCTTCCGACACTATTGAAAATGTCAAGGCCAA 38241 Query 106346 AATTGCCGACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACA 106405 |||| || ||||||||| | || ||||||||| | | |||| || ||||| || Sbjct 38242 AATTCAGGATAAAGAAGGCATTCCTCCAGATCAACAACGTTTGATTTTCGCTGGCAAGCA 38301 Query 106406 ATTAGAAGATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTT 106465 ||| |||||| || | ||| |||||||||||||| || || || | || || Sbjct 38302 ATTGGAAGATGGACGCACGTTATCCGACTACAACATACAAAAGGAGTCGACCTTGCACTT 38361 Query 106466 AGTA 106469 ||| Sbjct 38362 GGTA 38365 >seq4550 Length=29190 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 106253 TTTAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGA 106312 ||| |||||||| || || || || ||||||||||| || || || ||| |||| || Sbjct 5053 TTTTAAAATGCAGATCTTCGTGAAGACATTGACTGGGAAAACTATCACCTTGGAGGTTGA 5112 Query 106313 ACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGT 106372 || |||| || ||| | || ||| |||||| || |||||||| || || Sbjct 5113 GCCATCCGATACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAAGGAGTCCCACC 5172 Query 106373 TGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT--TCTAAAACTATGGGC 106430 |||||||| | | || | ||| |||||||| || ||| || | | ||| | | Sbjct 5173 AGATCAACAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCT--CC 5230 Query 106431 GATTACAACATACAAAAAGAATCTACACTACATTTAGTATT 106471 || |||||||| || |||||||| ||||| ||||| || || Sbjct 5231 GACTACAACATTCAGAAAGAATCGACACTCCATTTGGTTTT 5271 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||| ||||||||||| |||||||| || || || || ||||| ||||| Sbjct 5743 AATGCAAATATTTGTTAAAACTTTGACTGGAAAAACGATCACTTTGGAAGTGGAACCGTC 5802 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 || || | | | || ||| |||||| ||||| ||||| | || || || Sbjct 5803 GGACACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCA 5862 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 || | | || | ||| |||||||| || |||||| || || |||||||| Sbjct 5863 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCGGATTACAA 5922 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 ||||||||| |||||||| || || || || ||| | | || ||||| Sbjct 5923 CATACAAAAGGAATCTACTCTTCACTTGGTGTTGCGTCTCCGCGGAGG 5970 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||| ||||||||||| |||||||| || || ||||| |||| ||||| Sbjct 5515 AATGCAAATATTTGTTAAAACTTTGACTGGGAAAACGATTACTTTGGAGGTGGAACCGTC 5574 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 || || | | | || ||| |||||| ||||| ||||| | || || || Sbjct 5575 GGACACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCA 5634 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 || | | || | ||| |||||||| || |||||| || || |||||||| Sbjct 5635 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCGGATTACAA 5694 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTG 106472 ||||||||| ||||| ||| | ||||| || ||| Sbjct 5695 CATACAAAAGGAATCCACATTGCATTTGGTGTTG 5728 >seq4549 Length=20005 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| || ||||||||||||||||||||||| ||| | ||| || || | Sbjct 19707 ATGCAAATTTTCGTCAAAACATTGACTGGCAAGACCATCACCCTAGAAGTCGAGCCTTCC 19766 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | || || |||||| ||||| ||||| | ||| ||||| Sbjct 19767 GACACCATTGAAAACGTCAAGGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 19826 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGA--TTCTAAAACTATGGGCGATTACA 106437 ||| | | |||| ||| ||||| ||||| ||||| | | |||| ||||||| Sbjct 19827 CAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCCTAT--CTGATTACA 19884 Query 106438 ACATACAAAAAGAATCTACACTACATTTAGT 106468 |||| ||||| || || ||| | ||||| || Sbjct 19885 ACATTCAAAAGGAGTCGACATTGCATTTGGT 19915 Score = 89.7 bits (98), Expect = 4e-13 Identities = 153/221 (69%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 106249 AGAGTTTAAAA-ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAA 106307 ||| ||||||| |||||||| ||||| |||||||| |||||||| || ||||| ||||| Sbjct 19467 AGATTTTAAAAAATGCAAATCTTTGTAAAAACATTAACTGGCAAAACTATTACTTTGGAA 19526 Query 106308 ACAGAACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTG 106367 ||||| ||| || | | | || || |||||| ||||| ||||| | Sbjct 19527 GTTGAACCATCGGATACTATCGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGTATT 19586 Query 106368 CCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATG 106427 ||| ||||| ||| | | |||| ||| ||||| ||||| ||||| || || Sbjct 19587 CCCCCAGATCAGCAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTG 19646 Query 106428 GGCGATTACAACATACAAAAAGAATCTACACTACATTTAGT 106468 |||||||| || || || || || ||| | ||||| || Sbjct 19647 TCTGATTACAATATTCAGAAGGAGTCGACATTGCATTTGGT 19687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402211570451168