Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq4550 172 5e-38 seq23389 109 5e-19 seq4549 96.9 3e-15 >seq4550 Length=29190 Score = 172 bits (190), Expect = 5e-38 Identities = 179/232 (77%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||||| || | | |||||||||||| || || |||||||| ||||||||||| | Sbjct 5744 TTCCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCG 5685 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||| || ||| | || |||| ||| || || ||||| ||||| ||||||||||| | || Sbjct 5684 ACAATGTGCGCCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 5625 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCC-ACCGTGTCGCTCGATTCC 35686 ||| | ||||||||| ||| |||||||| | ||| | | ||||| || |||| Sbjct 5624 GAATACCTTCCTTGTCCTGGAT-TTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCC 5566 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 ||||||| || |||||||| || ||||||||||| |||||||| ||||||| Sbjct 5565 ACCTCCAAAGTAATCGTTTTCCCAGTCAAAGTTTTAACAAATATTTGCATTC 5514 Score = 165 bits (182), Expect = 7e-36 Identities = 176/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | | |||||||||||| || || |||||||| ||||||||||| | Sbjct 5516 TTCCACCACGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCG 5457 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||| || ||| | || |||| |||||| || ||||| ||||| ||||||||||| | || Sbjct 5456 ACAATGTGCGCCCATCTTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 5397 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAG-TTGCCACCGTGTCGCTCGATTCC 35686 ||| | ||||||||| ||| |||||||| | | || | | || || ||||| Sbjct 5396 GAATACCTTCCTTGTCCTGGAT-TTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCT 5338 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||||| ||||| ||||| || |||||||| || |||||||| ||||| Sbjct 5337 ACCTCCAAAGTGATGGTTTTGCCGGTCAAAGTCTTAACAAATATTTGCAT 5288 Score = 161 bits (178), Expect = 9e-35 Identities = 167/216 (77%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 ||||||||| || | ||| |||||||| ||||||||||| | ||| || ||| | || Sbjct 5956 CAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGCCCATC 5897 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 |||| ||| || || ||||| ||||| ||||||||||| | ||||| | |||||||| Sbjct 5896 TTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTC 5837 Query 35644 CATGATCTTTTGCTTCAGAGTTGCC-ACCGTGTCGCTCGATTCCACCTCCACCGTGATCG 35702 | ||| |||||||| | ||| | | ||||| || |||||| |||| ||||||| Sbjct 5836 CTGGAT-TTTTGCTTTAACGTTTTCGATAGTGTCCGACGGTTCCACTTCCAAAGTGATCG 5778 Query 35703 TTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 |||| || ||||||||||| |||||||| ||||||| Sbjct 5777 TTTTTCCAGTCAAAGTTTTAACAAATATTTGCATTC 5742 >seq23389 Length=58516 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 35509 TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGC 35568 |||||| || || | || ||| | |||||| || || |||||||| || ||||||| Sbjct 44401 TCCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGA 44460 Query 35569 CAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 ||| || || | || |||| ||||| || || || ||||| ||||||||||| | || Sbjct 44461 CAATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCGGGTGG 44520 Query 35629 AACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 || | ||| |||||| ||||| || | | || | | ||||| | ||| || Sbjct 44521 AATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCAATAGTGTCCGAGGGTTCGAC 44580 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | ||||| || || ||||| | ||||| ||||| |||||||| Sbjct 44581 CTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 44628 >seq4549 Length=20005 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 |||||||| || || ||||||||||||||||||||| | | ||| || |||| ||| Sbjct 19915 ACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAATCAGATAGGGTGCGTCCGTCTTCC 19856 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 | ||||| || ||||| ||||| || ||||| || | |||| | ||||||| | || Sbjct 19855 AATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTGT-CTTG 19797 Query 35648 ATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 | ||| | ||| | || | | |||||| | || || || | ||||| || || Sbjct 19796 AATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGACTTCTAGGGTGATGGTCTT 19737 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || ||||| ||||| || || || ||||| Sbjct 19736 GCCAGTCAATGTTTTGACGAAAATTTGCAT 19707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450657961840680