Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq9454 230 2e-55 seq4837 132 4e-26 seq20037 123 2e-23 >seq9454 Length=16677 Score = 230 bits (254), Expect = 2e-55 Identities = 496/727 (68%), Gaps = 30/727 (4%) Strand=Plus/Plus Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCA 43816 || || |||||||| || ||||| ||||| | |||||||| | | |||||| | Sbjct 13013 GCCTCTTTTTGGACTGCTGAAGAGGTTGACCTCTCTAAAGACATGGACGATTGGAATCGG 13072 Query 43817 TTAAA--ACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCG 43874 |||| || | ||| |||||||| || |||||||| |||||||| || || Sbjct 13073 TTAAGTGACGGC--GAACGGCATTTTATTTCACATGTTTTGGCTTTTTTTGCGGCATCCG 13130 Query 43875 ACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAG 43934 | || || || ||||| ||||| || || ||| | ||||| |||||| || | |||| Sbjct 13131 ATGGTATTGTTAATGAGAATTTAGTGGAACGATTTTCCCAAGAGGTTCAAATAACTGAAG 13190 Query 43935 CACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTC 43994 | || || ||||| || |||||||||||||| |||||| | |||||||||||||| |||| Sbjct 13191 CTCGTTGCTTTTACGGTTTTCAAATTGCCATGGAAAATGTGCATTCGGAAATGTATAGTC 13250 Query 43995 TTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGAT---TGTTTAATGCGA 44051 | || || || || || |||| |||| | | |||| | | || | |||||||| | Sbjct 13251 TACTTATCGAAACATATATCATGGATGAGAA--AGAA-CGTGAATATCTCTTTAATGCCA 13307 Query 44052 TAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAA 44111 | || ||| | || | |||| | || || || ||||| || ||||||| || Sbjct 13308 TTGAGACAATGCCATTGGTTAAGAAGAAGGCCGAATGGGCTCTAGCATGGATATCATCGC 13367 Query 44112 AT---GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTT 44168 || | | |||||| || || | | || || || | ||| ||||| ||||||||| Sbjct 13368 ATTCGGCTAATTTTGGCGAGCGTATCATAGCTTTCGCTGCTGTCGAAGGTATTTTCTTTA 13427 Query 44169 CAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGT 44228 || || || | ||||||||| |||||||||| || | ||||| || || || | Sbjct 13428 GTGGCAGCTTCGCTTCGATATTTTGGCTAAAGAAACGTGGAATAATGCCAGGTTTAACAT 13487 Query 44229 TTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGC-TTGCT--TGT 44285 | || ||||| | ||| |||||||||||||| || || || ||||| | || ||| Sbjct 13488 TCTCTAATGAAATGATATCACGTGATGAAGGCTTGCACTGTGAATTTGCGGTACTAATGT 13547 Query 44286 TACTTGGATATCTAGGAGACGATAAGC-CTTCATGTAAGACAATTACAGATATTGTTGTA 44344 || | || || | || | || | | | | | | ||| || || | Sbjct 13548 ---TTAAACATTTA--ATACAAAAACCGAGTAAAGAACG--GATTTTGGAAATAATAACT 13600 Query 44345 GAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGA 44404 || || ||||| || ||| |||| ||| ||||| ||| ||||| || | ||||| || Sbjct 13601 GATGCCGTAAAAATTGAAAAAGAGTTTTTGACAGAAGCCTTACCAGTCGACTTAATTGGC 13660 Query 44405 ATGAA---TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTG 44461 ||||| |||| | || || | ||||||| ||||| |||| |||||||| || || Sbjct 13661 ATGAACAGTGAAAGTATG-TGTA--AATATATAGAATATGTTGCCGATCGTTTGCTATTA 13717 Query 44462 GAACTGG 44468 ||| ||| Sbjct 13718 GAATTGG 13724 >seq4837 Length=103144 Score = 132 bits (146), Expect = 4e-26 Identities = 371/567 (65%), Gaps = 2/567 (0%) Strand=Plus/Plus Query 40854 GATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCA 40913 ||| | || ||||| || | || || |||| || ||||| | ||| |||||||| ||| Sbjct 5771 GATCGCGAAGAAGGCGACTTGGGGCCAATTTACGGTTTTCAATGGCGCCATTTTGGGGCA 5830 Query 40914 AAATATGACACTATGTA-CTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGT 40972 |||||| |||| ||| | | |||| | | ||| | |||||||| || | Sbjct 5831 AAATATCGCACT-TGTCGCGATACTTATGGTACGGAGGGAGTCGATCAATTGAAGCAGAT 5889 Query 40973 TATAGATACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCC 41032 || || || | | |||| | |||||||| || |||| | | ||||| || Sbjct 5890 AATTAGGACAATAACTACAAATCCTACTGATCGACGTATGATTTTGTCCTCTTGGAATCC 5949 Query 41033 AACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTG 41092 | || ||| ||||| || ||||| || |||| || ||||| || || Sbjct 5950 AGTAGATATACCAAAAATGGCCTTACCACCCTGCCATTGCTTGGCCCAGTTCTATGTAGC 6009 Query 41093 CAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCC 41152 |||| ||| |||||||||||| | ||||| | | |||||||| || || ||||| Sbjct 6010 CAATAATGAGCTGTCATGTCAACTTTATCAGCGCAGTGCCGACATGGGGCTGGGTGTCCC 6069 Query 41153 GTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAA 41212 ||||| ||||| ||||| | | || | |||||||||||| | ||| | || Sbjct 6070 ATTTAATATAGCATCGTATGCATTATTAACCTCTATGATTGCACATTTAACCGGCCTTAA 6129 Query 41213 ACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCC 41272 ||| || || ||||| ||||| || ||| || ||||| | | || || | || Sbjct 6130 ACCAGGCGATTTTGTACACACTACCGGCGATACGCACATTTATAAAACGCATATCCAACC 6189 Query 41273 GTTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGC 41332 || | ||| ||| | ||||| ||||| ||||||| | | | || ||||| || Sbjct 6190 ATTGAAAGAGCAATTAACACGCAAACCGCATGCATTTCCTAAATTGATAATAAAACGTGC 6249 Query 41333 TGTTGAAAACATTGATGATTTTTGCATCGATGATTTTGTCGTTTGCGATTACAATCCGTA 41392 || ||||| ||||| ||||| | |||||| | || ||||| ||||| || Sbjct 6250 CGTAGAAAATATTGAGGATTTCAAGTACTCTGATTTCGAAATTGTGGATTATAATCCTTA 6309 Query 41393 CCCTAAAATCCACATGGACATGTCTGT 41419 || ||||| || ||||| ||| |||| Sbjct 6310 TCCAAAAATTCAAATGGAAATGGCTGT 6336 >seq20037 Length=63172 Score = 123 bits (136), Expect = 2e-23 Identities = 226/330 (68%), Gaps = 6/330 (2%) Strand=Plus/Minus Query 19612 GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTG 19671 || || ||||||||||| || |||||| | || | ||| | ||||| || | ||| || Sbjct 48427 GGCGTCCATGACACTGTAGTTAATCAATTGTTGGCTAAAATCGACGGAGTGGAGCAATTG 48368 Query 19672 AATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTA 19731 |||||||||||||||||||| ||||| ||| | | || | || || || ||| || Sbjct 48367 AATAATATTTTAGTTATTGGTATGACAAATCGCCGTGACATGATTGATGAGGCTTTACTA 48308 Query 19732 CGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTG 19791 || || ||||| |||||| | | || ||||| | || || | ||| |||| | || Sbjct 48307 CGTCCTGGTCGCTTGGAAGTGCAAATGGAAATCAGTTTGCCTAACGAAGTTGGAAGAGTA 48248 Query 19792 GAAATTTTAAACATACATACATCAACCATGCGACA---AAATAACCTTTTAAATGACGAT 19848 ||||| |||| || || || | ||||| | ||||| || || ||| Sbjct 48247 CAAATTCTAAATATTCACACGAAACGTATGCGTGATTTTAATAAAATT---GCTGGAGAT 48191 Query 19849 GTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTTGAGGGA 19908 || ||| ||||||| || || |||||| || | |||||||| ||| | || || Sbjct 48190 GTGGATACGAAAGAAATCGCTGCCCTTACCAAGAATTTCAGCGGCGCTGAATTGGAAGGC 48131 Query 19909 TTAGTGAGGGCCGCCCAATCAATTGCAATG 19938 ||||| | || |||||||| | ||| ||| Sbjct 48130 TTAGTACGTGCTGCCCAATCTACTGCTATG 48101 Score = 95.1 bits (104), Expect = 1e-14 Identities = 195/287 (68%), Gaps = 6/287 (2%) Strand=Plus/Minus Query 19243 ATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302 || || || ||| |||||| || || ||||| ||| | || |||| || | ||| Sbjct 48862 ATCGGCGGCTTGGATAAAGAATTCAATGCTATCTTCCGTCGTGCTTTTGCTTCAAGAGTT 48803 Query 19303 TTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTAT 19362 ||| | | || || || |||| |||| || || ||||| || ||||||| ||| Sbjct 48802 TTTCCCCCCGAAGTGGTTGAACAGCTGGGTTGCAAGCATGTCAAAGGTATTTTGCTGTAT 48743 Query 19363 GGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAAAA 19422 || || || ||| ||| ||||| || || || | || | | || || | || Sbjct 48742 GGTCCTCCTGGTACTGGTAAAACCTTGATGGCTCGCCAAATAGGCAA--TATGTTGAATG 48685 Query 19423 CAACCT---CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCG 19479 | | | || |||||||||||||| ||| || | ||| |||||||||| || | || Sbjct 48684 CT-CGTGAGCCAAAAATTGTAAATGGCCCTCAAGTATTAGATAAATATGTTGGCGAGTCC 48626 Query 19480 GAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAA 19526 |||| ||| || |||| ||||| || || ||||| |||||| |||| Sbjct 48625 GAAGCTAATATAAGACGGTTGTTCGCCGAAGCTGAGGAAGAAGAAAA 48579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397339400196355