Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq15038 185 7e-42 seq23389 118 9e-22 seq4550 102 7e-17 seq181 100 2e-16 seq4549 98.7 8e-16 seq1380 82.4 6e-11 >seq15038 Length=36294 Score = 185 bits (204), Expect = 7e-42 Identities = 743/1145 (65%), Gaps = 39/1145 (3%) Strand=Plus/Plus Query 130735 ATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTA 130794 |||||| | |||||||| ||| | | ||| ||||||| ||| ||||||| ||| Sbjct 4778 ATCTTTAAGCAAATGATGATTGACTACGATAAACTCACCAGACAGTACGCGTCGTGTGTA 4837 Query 130795 AATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGC 130854 |||||| || |||| ||||| || |||||||| || | ||||| || |||| || Sbjct 4838 AATGTTTGAAGTATACGGCTCAAAAGACTCGTTGTTACCAAGAATTTGAGCAGTAGACGC 4897 Query 130855 GGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCG-CT 130913 || ||||| || || | | |||||| || | || | | | || | || || Sbjct 4898 CGTAGGCATTGGAGCTACCAGCAAAGAATTGCGCACTCCACACCTTTTAATGT--CGTCT 4955 Query 130914 TCAATT-CATCCCAATCCCATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTGT 130972 | || | ||||| ||||||| ||||| | || | |||||||||| |||| Sbjct 4956 TTAAGAGCGGACCAATTCCATAGACCAGTAGGCGTT---TTATCCCACATATCATATTGA 5012 Query 130973 AGTATGCCTTTACTGGCGGGACTGGATTCGAACGATTCGTAGATTCCTTCGACACGAGCC 131032 || || |||||||| | ||||| ||| | | |||||| || | | ||| Sbjct 5013 AGGATACCTTTACTAACTGGACTACCTTCATATGTTTCGTACGGACCGTATAGTTTGGCC 5072 Query 131033 AGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTAAT 131092 | || |||||||| || || |||||||| || ||||| ||||||||||||||| Sbjct 5073 AATTCACAACTAGCTTCTAAGGCACCGTAATATATTGTTTCAAAAATTTGTTTATTTAAG 5132 Query 131093 TGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGACCC 131152 || || | | ||| ||||| ||| | ||||||||| | ||||| || | || Sbjct 5133 CGTGCAGCATTTTCGCTTTCGTAGGGATAACGCATTAAAATTAGTGCGTCAGCAAATCCT 5192 Query 131153 TGTATCCCAACGCCCACCGGTCTATGTTTTAAATTACATTTACGCGAACATTCGG---TG 131209 || | || | || | || | ||| |||||| | || | | | ||| || Sbjct 5193 TGGACGCCTAAACCAATTGGACGATGACGAAAATTAGACTTTCTGGTT--TCCGGCAATG 5250 Query 131210 GGATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCTT 131269 || || || || || ||||||||||| | ||| | || || | || || | Sbjct 5251 GG-TAGTAATTGATATCGATTATTTTGTTGAGATTCCTTGTTATAAGCTTTGCAACTTCT 5309 Query 131270 TTCAATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAATTGATTTA-CACATAT 131328 || | ||||| |||||| | || ||| | |||| || ||| | | || || Sbjct 5310 TTGAGTTTGTGAAAATCATAT-TGTTTATTTGTCG--TTACGAACATATTCAACGCA-AT 5365 Query 131329 TGACGCCAGATTACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCA 131388 ||| |||||||| |||||||| |||| ||| ||| | || ||||| | || Sbjct 5366 TGATGCCAGATTGCAAACTGCTATTTCTTCAGCCGACGTATATTCGACGATTTCTGTACA 5425 Query 131389 CAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATG-GT 131447 || ||||||| ||||| ||||| | ||| |||||||| ||||| || | || | || Sbjct 5426 TAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGATTACTTTT-GCGGTTGCAAGCGT 5484 Query 131448 CCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTT-TCAATAATGTATCGAA-- 131504 | ||||| | |||||| || || || ||||| ||||| | | ||| || |||| Sbjct 5485 CTTTGTAAAGCATGTAAGGAGTTCCGGTTTCTACTTGGGCACTGCATATTG---CGAACC 5541 Query 131505 AGAGTTTTCGAGCAGACAAT-TGATATTTGTATTGGCCGCGTTTTTCGTAATTTTCGTAC 131563 | | | ||||| | | | | || | ||| || ||| || |||| || |||| Sbjct 5542 ATAAGTCACGAGCTTTTATTGTTTTGTTCGCTTTGCCCTCGTCTT-CGTATTTCACGTAT 5600 Query 131564 AACGTTTCAAAGTTTTGGCCAAACGAACTGTC---CAAATTGGGACATTCGCTGGGACAC 131620 || | ||||| || | ||| | | | || ||| || |||| ||||||| Sbjct 5601 AATCTATCAAATTTGTCTCCATA---AATTTCACACAAGCCAGGGCATTTATGGGGACAC 5657 Query 131621 ATTAGCGACCACACGCCGTTCTG-TTCAACTCGCTTCATAAACAAATCCGGCACCCATAA 131679 ||||| ||||| | || || | ||||||| ||||| |||| ||| || | ||| | Sbjct 5658 ATTAGAGACCA-ATGCTCATCAGCCTCAACTCTTTTCATGAACAGATCAGGTATCCACAG 5716 Query 131680 CGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAA 131739 || || || | ||||| || | ||| ||| ||||| || ||||||||||||||| Sbjct 5717 AGCATAAAATAAATCTCGTGCACGATCCTCCTCTTTACCCGTATTTTTTTTCAAATTTAG 5776 Query 131740 AAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCGCTT 131799 ||| || ||||| || || ||||| || || || || | || | || || || || Sbjct 5777 AAATTCGAAAATATCTGCGTGCCAAGGCTCTAAGTATATAGCAAAAGCCCCCGGACGTTT 5836 Query 131800 ---ACCGCCTTGATTAACATGACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAA 131856 ||| ||||| | |||| ||| | | |||||| | | |||||||| || | | Sbjct 5837 TCCACCACCTTGGTCGACATAACGGGCAACATTGTTGAACAGACGCAACATAGGAACAAG 5896 Query 131857 ACCGT 131861 ||||| Sbjct 5897 ACCGT 5901 >seq23389 Length=58516 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || ||||| |||| || | |||||| || || |||||||||||||| || ||| | Sbjct 44402 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 44461 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | ||||| | || || || ||| |||| | ||||| || || || || Sbjct 44462 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCGGGTGGA 44521 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||||| || |||||| ||| | |||| | |||||| | || ||| || Sbjct 44522 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCAATAGTGTCCGAGGGTTCGACC 44581 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| || | |||||||| || ||||| ||||| || |||||| Sbjct 44582 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATA 44629 >seq4550 Length=29190 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || ||||| || || |||||||| | || || ||||| ||||| ||||||||| Sbjct 5286 CCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAG 5227 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | | ||| | |||||| || || | || | |||||||||||| || || Sbjct 5226 AGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGTTGATCTGGTGGG 5167 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAAC 27199 || || |||||||| || || |||| | | || | ||| || | |||| ||||| Sbjct 5166 ACTCCTTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGC-TCAAC 5108 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || |||| ||| || |||| || ||||| ||||| ||||| Sbjct 5107 CTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCAT 5060 >seq181 Length=60274 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27030 AACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGC 27089 || || || |||||||| | || ||| | ||||| || || ||||| | | ||| Sbjct 37563 AAACGTAAAACCAAATGGAGAGTCGAGCCCTTTTGTATGTTATAGTCCATTAATGTGCAA 37622 Query 27090 TCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCT 27149 | ||||| ||||| || ||||||||||| | ||| |||||| || || | || ||| Sbjct 37623 CCATCTTCCAGCTGCTTGCCGGCGTAAATCAAACGACGTTGATTTGGTGGGATGCCGTCT 37682 Query 27150 TTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTT 27209 |||| |||||| |||| | ||||| | ||| || || | ||| || |||| ||| Sbjct 37683 TTATTCCGAATCTTGGTTTTAATCGTTTCAATAGTATCGGTCGGTTCGACATCTAAAGTG 37742 Query 27210 ATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || ||||| | |||||||| || || ||||| Sbjct 37743 ATGGTATTTCCCGTTAACGTTTTCACGAAAATCTGCAT 37780 >seq4549 Length=20005 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||| | || | |||||||| || || || || || ||||||||||| || | Sbjct 19705 CCACCGCGTAGACGTAGGACCAAATGCAATGTCGACTCCTTCTGAATATTGTAATCAGAC 19646 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| ||||||| | || || || || |||| | ||| || ||||| || || Sbjct 19645 AAGGTGCGTCCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGA 19586 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || || || || || || | |||| | ||| || | | ||||||| Sbjct 19585 ATACCTTCCTTGTCTTGAATTTTAGCCTTAACATTTTCGATAGTATCCGATGGTTCAACT 19526 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | ||| |||| |||||| || | ||||| |||||||||||||| Sbjct 19525 TCCAAAGTAATAGTTTTGCCAGTTAATGTTTTTACAAAGATTTGCAT 19479 >seq1380 Length=63849 Score = 82.4 bits (90), Expect = 6e-11 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 96885 AAAGGTTTACACGGGTTTCATGTACACGAGTTTGGCGACACGAGCAACGGCTGCACTTCG 96944 || || ||||| || |||||||| ||||| || || |||| | |||||||||||||| Sbjct 30940 AAGGGATTACATGGTTTTCATGTTCACGAATTCGGGGACAATACTAACGGCTGCACTTCT 30999 Query 96945 GCCGGCGAACATTTCAA-CCCTACATTGCAAAATCACGGCGCACCCAGCGCCATTGAACG 97003 ||||| | ||||| || || | || | || | ||||| ||||||| | | ||| || Sbjct 31000 GCCGGTGCGCATTTTAATCCTTGCAAT-AAAGAGCACGGAGCACCCACTGATAATGAGCG 31058 Query 97004 CCACGTTGGTGATCTGGGCAACGT 97027 || | |||||| ||||||| || Sbjct 31059 TCATATCGGTGATTTGGGCAATGT 31082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424809738986952