Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq14689 91.5 2e-13 seq20331 84.2 3e-11 >seq14689 Length=1457 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 11537 TCAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCT 11596 || || ||||||||||| || || | || || | || ||||| | |||||| ||| | Sbjct 760 TCGAAACCATCCATCTCAGTAAGGAGCTGGTTCAGAGTCTGTTCGCGCTCATCGTTTCC- 818 Query 11597 GGCATACCACCAGCACTG---CGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACA 11653 || | ||| | | || | |||| ||| || | ||||||||||||||||| || || Sbjct 819 -GCCTGCCATCTG-ACCGTCACGTTTCTTACCGATGGCATCAATCTCATCAATAAACACG 876 Query 11654 ATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACA 11713 ||||| || ||||| ||| || |||||| || |||||| | ||||||| Sbjct 877 ATACACGGAGCTTTTTCTTTGGCCTGTTTAAAGAGGTCACGAACCTTCGATGCACCCATG 936 Query 11714 CCAACAAACATCTCCACAAA 11733 || |||||||| |||||||| Sbjct 937 CCGACAAACATTTCCACAAA 956 >seq20331 Length=18106 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 11623 GCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTC 11682 ||| ||||| || || |||||||| |||| ||| || || ||||| ||||| | | | Sbjct 15758 GCCTACCGCGTCTATTTCATCAATAAAGAGAATGCAAGGAGCATTTTTACGGGCCAATGC 15699 Query 11683 AAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGC 11742 ||| | ||| || || || | |||||| ||||||||||| || | || | | | Sbjct 15698 AAACATATCACGCACTCTCGATGGACCCACGCCAACAAACATTTCTAAGAATTCGGAACC 15639 Query 11743 AGAG-CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 11801 |||| || | ||| ||||| ||||| | ||| || || | || || || ||||| | Sbjct 15638 AGAGACAGT-GATAAATGGCACATTAGCTTCTCCTGCAGTCGCCTTTGCAAGTAGGGTTT 15580 Query 11802 TTCCCGTACCTGG 11814 |||| |||||||| Sbjct 15579 TTCCAGTACCTGG 15567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627843033021600