Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq19840 100 4e-16 seq14689 96.9 4e-15 >seq19840 Length=86373 Score = 100 bits (110), Expect = 4e-16 Identities = 128/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 179064 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATT 179123 ||||||||| || | | || || |||||||| || | |||||| | ||||| ||||| Sbjct 57782 ATCTTTGCCGCCAGTTAAGCGGGTACCAAATTGGCCTCTTGGCTCCAACAGATTTATATT 57841 Query 179124 GTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 179182 || || |||| || | | ||||| |||||||| || || || | | | ||||||| Sbjct 57842 ATTCGAGCCCACATAATTTTGTGCCAAATTGACAATGGTCATTTGCAAAG-ACACTTCAC 57900 Query 179183 CGTGATGGTAAGCCGACTTGTCCGCCACATATGCCGCCAACTGCGCCACCTTCA 179236 | ||||||||||| ||| | |||||||| || | | |||||||| || |||| Sbjct 57901 CATGATGGTAAGCGGACATTTCCGCCACGGATCCAGATAACTGCGCAACTTTCA 57954 >seq14689 Length=1457 Score = 96.9 bits (106), Expect = 4e-15 Identities = 194/282 (69%), Gaps = 8/282 (3%) Strand=Plus/Plus Query 14150 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CG 14207 || || |||||||||||||| | ||| || || | || |||||||| ||||| || || Sbjct 760 TCGAAACCATCCATCTCAGTAAGGAGCTGGTTCAGAGTCTGTTCGCGCTCATCGTTTCCG 819 Query 14208 -CAGGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACG 14266 | | ||| ||| || |||| |||||||| ||| ||||| ||||| || || ||| Sbjct 820 CCTGCCATCTGACCGTCA---CGTTTCTTACCGATGGCATCAATCTCATCAATAAACACG 876 Query 14267 ATACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACA 14326 ||||| || ||||| ||| || ||||| || || || || ||||| | Sbjct 877 ATACACGGAGCTTTTTCTTTGGCCTGTTTAAAGAGGTCACGAACCTTCGATGCACCCATG 936 Query 14327 CCCACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTC 14385 || |||||||| |||||||| | | ||| |||| | || || || ||||| ||||| Sbjct 937 CCGACAAACATTTCCACAAATTCAGAACCGG-ACATGGAGAAAAACGGCACGTTGGATTC 995 Query 14386 ACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || || | || || || | |||||| || || || || Sbjct 996 TCCGGCTACCGCCTTTGCCAGCATGGTCTTACCTGTTCCGGG 1037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618249120578760