Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq14689 93.3 5e-14 seq9454 93.3 5e-14 >seq14689 Length=1457 Score = 93.3 bits (102), Expect = 5e-14 Identities = 193/282 (68%), Gaps = 8/282 (3%) Strand=Plus/Plus Query 9611 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATT--CG 9668 || |||||||||||||| || | || ||||| | ||| ||||| || ||||| || || Sbjct 760 TCGAAACCATCCATCTCAGTAAGGAGCTGGTTCAGAGTCTGTTCGCGCTCATCGTTTCCG 819 Query 9669 C-TGGCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 9727 | || ||| ||| ||| ||| ||| || | |||||||||||||||||| || ||| Sbjct 820 CCTGCCATCTGACCGTCAC---GTTTCTTACCGATGGCATCAATCTCATCAATAAACACG 876 Query 9728 ATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACA 9787 || || || ||||| || || |||||| || || || | || |||| Sbjct 877 ATACACGGAGCTTTTTCTTTGGCCTGTTTAAAGAGGTCACGAACCTTCGATGCACCCATG 936 Query 9788 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 9846 || |||||||| |||||||| | | ||| |||| | || || || || || ||||| Sbjct 937 CCGACAAACATTTCCACAAATTCAGAACCGG-ACATGGAGAAAAACGGCACGTTGGATTC 995 Query 9847 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 || || | || || || | |||||||| || || || Sbjct 996 TCCGGCTACCGCCTTTGCCAGCATGGTCTTACCTGTTCCGGG 1037 >seq9454 Length=16677 Score = 93.3 bits (102), Expect = 5e-14 Identities = 346/529 (65%), Gaps = 20/529 (4%) Strand=Plus/Plus Query 94440 TTGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTCTAAATGA 94499 |||||||||||||||||| || ||||| || || ||||||||||||| ||| ||| Sbjct 13021 TTGGACTGCTGAAGAGGTTGACCTCTCTAAAGACATGGACGATTGGAATCGGTTAAGTGA 13080 Query 94500 AAATGAAAAGAAATTCATAAAATACATCCTGGCATTCTTTGCTGGATCCGATGGAATTGT 94559 ||| | | || || | | | |||| || ||||| | ||||||||| ||||| Sbjct 13081 CGGCGAACGGCATTTTATTTCACATGTTTTGGCTTTTTTTGCGGCATCCGATGGTATTGT 13140 Query 94560 TTTTGAGAATATCAAT--AACAACTTTGCTGATGAGGTGCAATCCTCTGAAGCGAGATCC 94617 | ||||||| | | | ||| | ||| | | ||||| ||| ||||||| | | | Sbjct 13141 TAATGAGAAT-TTAGTGGAACGA-TTTTCCCAAGAGGTTCAAATAACTGAAGCTCGTTGC 13198 Query 94618 TTCTATGCGTATC--AGTGTCATAATGAAATGGTGCATGGGGAGACATACAGTAAACTCA 94675 || || | | || | || ||| |||| |||||| ||| | || ||| ||| | Sbjct 13199 TTTTACGGTTTTCAAATTGCCAT--GGAAAATGTGCATTCGGAAATGTATAGTCTACTTA 13256 Query 94676 TAGACAAGTATATTAAGGATGGTGCTGAGAA---GAAGCAGCTCTTTGAAGCCATCCAAA 94732 | || | ||||| | ||||| |||| ||| | |||||| | ||||| | | Sbjct 13257 TCGAAACATATATCATGGATG--AGAAAGAACGTGAA-TATCTCTTTAATGCCATTGAGA 13313 Query 94733 CAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTAT-GAAGTGGTTTGATACAAAGTCG 94791 || | || | || | ||||| || || |||||| | | | | | | || | | ||| Sbjct 13314 CAATGCCATTGGTTAAGAAGAAGGCCGAATGGGCTCTAGCATGGATATCAT-CGCATTCG 13372 Query 94792 CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGT 94851 | |||| ||||| || | || || || ||| || ||||| ||||| ||| Sbjct 13373 GCTAATTTTGGCGAGCGTATCATAGCTTTCGCTGCTGTCGAAGGTATTTTCTTTAGTGGC 13432 Query 94852 TCCTT--CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCT 94909 ||| || || |||| |||||| ||||| || || | ||||||||| | |||| Sbjct 13433 AGCTTCGCTTCGATATT--TTGGCTAAAGAAACGTGGAATAATGCCAGGTTTAACATTCT 13490 Query 94910 CCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGT 94958 | || || | || || ||||| || || | ||| || |||||||| Sbjct 13491 CTAATGAAATGATATCACGTGATGAAGGCTTGCACTGTGAATTTGCGGT 13539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583085304116040