Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq19840 104 3e-17 seq15038 86.0 7e-12 >seq19840 Length=86373 Score = 104 bits (114), Expect = 3e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363 ||| ||||||||||||| || ||| ||| ||||| |||| | || ||||| ||||| Sbjct 57755 AGTAAAAATGTAACGAGCACTAGCACTATCTTTGCCGCCAGTTAAGCGGGTACCAAATTG 57814 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 || || |||||||| || || | || || | ||||||| | ||||| ||||| ||||| Sbjct 57815 GCCTCTTGGCTCCAACAGATTTATATTATTCGAGCCCACATAATTTTGTGCCAAATTGAC 57874 Query 117424 AATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCC 117483 ||| || ||| | | | |||||||| || || || | | ||||||||| | || Sbjct 57875 AATGGTCATTTGCAAAGACACTTCACCATGATGGTAAGCGGACATTTCCGCCACGGATCC 57934 Query 117484 CGCCAGCTGAGCCACCTTCA 117503 | | ||| || || |||| Sbjct 57935 AGATAACTGCGCAACTTTCA 57954 >seq15038 Length=36294 Score = 86.0 bits (94), Expect = 7e-12 Identities = 176/259 (68%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 53498 GTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAG 53557 || |||||| | || | |||||||| ||||| || ||| |||| |||||||| || Sbjct 5893 GTTCCTATGTTGCGTCTGTTCAACAATGTTGCCCGTTATGTCGACCAAGGTGGTGGAAAA 5834 Query 53558 CGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTC 53617 || |||| | || || || ||| | ||||| |||||||| || ||| | || ||||| Sbjct 5833 CGTCCGGGGGCTTTTGCTATATACTTAGAGCCTTGGCACGCAGATATTTTCGAATTTCTA 5774 Query 53618 GAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTTTACAGCTCT 53676 | || ||| |||| | || ||| || ||| || || | ||| ||||| Sbjct 5773 AATTTGAAAAAAAATACGGGTAAAGAGGAGGATCG-TGCACGAGATTTATTTTATGCTCT 5715 Query 53677 GTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTG 53736 |||||| || || || |||||| ||| || ||| || ||| | |||| || ||||| Sbjct 5714 GTGGATACCTGATCTGTTCATGAAAAGAGTTGAGGCTGATGAGCATTGGTCTCTAATGTG 5655 Query 53737 CCCGAACGAGTGCCCCGGC 53755 || | | ||||| ||| Sbjct 5654 TCCCCATAAATGCCCTGGC 5636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547051349545800