Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq4550 140 2e-28 seq4549 104 1e-17 seq23389 96.9 2e-15 >seq4550 Length=29190 Score = 140 bits (154), Expect = 2e-28 Identities = 166/220 (75%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||||||||| || ||||| |||||||| ||||| ||||| || | ||| ||| Sbjct 5961 AGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGC 5902 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||||| || ||||| || |||||||| ||||| || || | || ||| Sbjct 5901 CCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCC 5842 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGT-CTTCGCTCTCCACTTCCACGG 34666 ||||| ||| ||||| ||||||| | || |||| | || | |||||||||| | Sbjct 5841 TTGTCCTGGAT-TTTTGCTTTAACGTTTTCGATAGTGTCCGACGGT-TCCACTTCCAAAG 5784 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||||||| || || || ||||| ||||| || ||||| Sbjct 5783 TGATCGTTTTTCCAGTCAAAGTTTTAACAAATATTTGCAT 5744 Score = 134 bits (148), Expect = 9e-27 Identities = 165/220 (75%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||||||||||||| | ||| |||||||| ||||| ||||| || | ||| ||| Sbjct 5733 AGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGC 5674 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||||| || ||||| || |||||||| ||||| || || | || ||| Sbjct 5673 CCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCC 5614 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGT-CTTCGCTCTCCACTTCCACGG 34666 ||||| ||| ||||| ||||||| | || |||| | || | ||||| |||| | Sbjct 5613 TTGTCCTGGAT-TTTTGCTTTAACGTTTTCGATAGTGTCCGACGGT-TCCACCTCCAAAG 5556 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||||||| || || || ||||| ||||| || ||||| Sbjct 5555 TAATCGTTTTCCCAGTCAAAGTTTTAACAAATATTTGCAT 5516 Score = 116 bits (128), Expect = 2e-21 Identities = 161/221 (73%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||||||||||||| | ||| |||||||| ||||| ||||| || | ||| ||| Sbjct 5505 AGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCCGACAATGTGCGC 5446 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | || || || ||||| || |||||||| ||||| || || | || ||| Sbjct 5445 CCATCTTCCAACTGCTTTCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCC 5386 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCT--CTCCACTTCCACG 34665 ||||| ||| ||||| ||||||| | || || || || | || || |||| Sbjct 5385 TTGTCCTGGAT-TTTTGCTTTAACGTTTTCGATAGTATC--CGATGATTCTACCTCCAAA 5329 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || ||||| ||||| || || || ||||| || ||||| Sbjct 5328 GTGATGGTTTTGCCGGTCAAAGTCTTAACAAATATTTGCAT 5288 Score = 111 bits (122), Expect = 1e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34491 ACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTC 34550 ||| || ||||||||||| || || || |||||||| || || || ||||| || | Sbjct 5275 ACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCC 5216 Query 34551 GTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTT 34610 | ||| | ||||| || ||||| || ||||||||||| || || || ||||| || || Sbjct 5215 ATTTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGTTGATCTGGTGGGACTCCTTCTTT 5156 Query 34611 GTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTA 34669 ||| ||| ||| |||||||| | ||| || || ||| || |||| ||| | Sbjct 5155 ATCT-TGAATTTTAGTTTTAACATTCTCAATAGTATCGGATGGCTCAACCTCCAAGGTGA 5097 Query 34670 TCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 | ||||| || || || || ||||| || |||||||| || Sbjct 5096 TAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATTTT 5057 >seq4549 Length=20005 Score = 104 bits (114), Expect = 1e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | |||||||| | || ||||||||||||||| ||||| || || || || Sbjct 19924 AGACGTAGGACCAAATGCAATGTCGACTCCTTTTGAATGTTGTAATCAGATAGGGTGCGT 19865 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 ||||||| | ||| || || ||||| || ||||| || || || || || | || ||| Sbjct 19864 CCGTCTTCCAATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCC 19805 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| ||| ||| | || ||| | ||| ||||| ||| ||||| | ||| Sbjct 19804 TTGTCT-TGAATTTTAGCCTTGACGTTTTCAATGGTGTCGGAAGGCTCGACTTCTAGGGT 19746 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || ||||| || ||||| ||||| Sbjct 19745 GATGGTCTTGCCAGTCAATGTTTTGACGAAAATTTGCAT 19707 >seq23389 Length=58516 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| | ||||| ||| | ||| | ||| || |||||||| |||||||| || Sbjct 44402 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 44461 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||| | ||| || || || || || || ||||| ||||| || || Sbjct 44462 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGCTGCTGGTCGGGTGGA 44521 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | |||||| ||||| ||||| ||||| | ||| ||||| | || || Sbjct 44522 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCAATAGTGTCCGAGGGTTCGACC 44581 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || | || || || || || |||| ||||| |||||||||||||| ||| Sbjct 44582 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATTG 44632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314637269252543