Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20morsitans_20morsitans_20[genbank_20GCA_5F001077435.1_2020 14-03-12] 24,071 sequences; 363,107,242 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq11312 188 6e-43 seq4549 176 4e-39 seq23389 170 2e-37 seq4550 163 2e-35 seq181 122 8e-23 seq20437 113 4e-20 seq16703 93.3 4e-14 >seq11312 Length=46762 Score = 188 bits (208), Expect = 6e-43 Identities = 183/233 (79%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||||| || ||||| |||||||| | ||||| || || ||| Sbjct 38156 ATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCTTCC 38215 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| |||||||| || ||||||||||| || || |||||| Sbjct 38216 GACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGATCAA 38275 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 || ||||| || | ||| ||||| ||||||||||| | || |||| ||||| ||||| Sbjct 38276 CAACGTTTGATTTTCGCTGGCAAGCAATTGGAAGA-TGGACGCACGTTATCCGACTACAA 38334 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAA 27219 ||| ||||||||||||||||| || ||||| | ||| | || |||||||||| Sbjct 38335 CATACAAAAGGAGTCGACCTTGCACTTGGTACTCCGTCTCCGTGGTGGCATAA 38387 >seq4549 Length=20005 Score = 176 bits (194), Expect = 4e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || ||||| |||| |||||| | || || || ||||| || || ||| Sbjct 19707 ATGCAAATTTTCGTCAAAACATTGACTGGCAAGACCATCACCCTAGAAGTCGAGCCTTCC 19766 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| |||||||||||||| ||||| || || || ||||| Sbjct 19767 GACACCATTGAAAACGTCAAGGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 19826 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || ||||| |||||||||||| | ||| | || ||||||||| Sbjct 19827 CAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCCTATCTGATTACAAC 19886 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||||||||| || |||||||| | ||| |||| ||||| || Sbjct 19887 ATTCAAAAGGAGTCGACATTGCATTTGGTCCTACGTCTGCGCGGTGGTAT 19936 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||||||||| | || ||||| |||||||| | ||||| ||||| || Sbjct 19479 ATGCAAATCTTTGTAAAAACATTAACTGGCAAAACTATTACTTTGGAAGTTGAACCATCG 19538 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || |||||||||||||| ||||| || || || ||||| Sbjct 19539 GATACTATCGAAAATGTTAAGGCTAAAATTCAAGACAAGGAAGGTATTCCCCCAGATCAG 19598 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || ||||| |||||||||||| | ||| | || |||||||| Sbjct 19599 CAACGTTTGATTTTTGCTGGCAAGCAATTGGAAGACGGACGCACCTTGTCTGATTACAAT 19658 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||||||||| || |||||||| | ||| | || ||||| || Sbjct 19659 ATTCAGAAGGAGTCGACATTGCATTTGGTCCTACGTCTACGCGGTGGTAT 19708 >seq23389 Length=58516 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||||||||| || || |||||| | || |||||||| || ||||| || Sbjct 44628 ATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCCTCG 44569 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| || ||||| |||||||| || || |||||||| || Sbjct 44568 GACACTATTGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGACCAG 44509 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | ||| || || ||||||||||| | || | |||||||| || Sbjct 44508 CAGCGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCCGATTATAAT 44449 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||| || || ||||||||| | || |||||||||| ||||| Sbjct 44448 ATTCAAAAAGAATCCACCTTACATCTTGTGCTGCGTTTGCGAGGTGG 44402 >seq4550 Length=29190 Score = 163 bits (180), Expect = 2e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||| |||||| |||| || || | |||||| | || ||||||||||| Sbjct 5516 ATGCAAATATTTGTTAAAACTTTGACTGGGAAAACGATTACTTTGGAGGTGGAACCGTCG 5575 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| |||||| || ||||| ||||| || || || || || Sbjct 5576 GACACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCAG 5635 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | || |||||||| |||||||| | || | || ||||||||| Sbjct 5636 CAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCGGATTACAAC 5695 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || || || |||||||| |||||| | || ||||| || Sbjct 5696 ATACAAAAGGAATCCACATTGCATTTGGTGTTGCGTCTCCGCGGTGGAAT 5745 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| || || |||| || | || || || || ||| Sbjct 5060 ATGCAGATCTTCGTGAAGACATTGACTGGGAAAACTATCACCTTGGAGGTTGAGCCATCC 5119 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || ||| ||||||||||| |||||||| | ||||| |||||| Sbjct 5120 GATACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAAGGAGTCCCACCAGATCAA 5179 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | || |||||||| |||||| | | || | ||||| |||||| Sbjct 5180 CAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCCGACTACAAC 5239 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || || ||||| | ||||||||||| |||||||| ||||| || Sbjct 5240 ATTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGGTAT 5289 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||| |||||| |||| || || | || ||| | |||||||||||||| Sbjct 5744 ATGCAAATATTTGTTAAAACTTTGACTGGAAAAACGATCACTTTGGAAGTGGAACCGTCG 5803 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| |||||| || ||||| ||||| || || || || || Sbjct 5804 GACACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCAG 5863 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | || |||||||| |||||||| | || | || ||||||||| Sbjct 5864 CAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGGCGCACATTGTCGGATTACAAC 5923 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || |||||||| || || | || ||||| |||||| | || || || Sbjct 5924 ATACAAAAGGAATCTACTCTTCACTTGGTGTTGCGTCTCCGCGGAGG 5970 Score = 136 bits (150), Expect = 3e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||| || ||| |||||||||| | || ||| | || || ||| | || Sbjct 5288 ATGCAAATATTTGTTAAGACTTTGACCGGCAAAACCATCACTTTGGAGGTAGAATCATCG 5347 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| |||||| || ||||| ||||| || || || || || Sbjct 5348 GATACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCAG 5407 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | || || || || |||||||| | || | || ||||||||| Sbjct 5408 CAGCGTTTGATCTTTGCTGGAAAGCAGTTGGAAGATGGGCGCACATTGTCGGATTACAAC 5467 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || |||||||| || || || |||||||| |||||| | || ||||| || Sbjct 5468 ATACAAAAGGAATCCACATTGCATTTGGTGTTGCGTCTCCGTGGTGGAAT 5517 >seq181 Length=60274 Score = 122 bits (134), Expect = 8e-23 Identities = 168/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| | || || || | || ||| | || || |||||| || Sbjct 37780 ATGCAGATTTTCGTGAAAACGTTAACGGGAAATACCATCACTTTAGATGTCGAACCGACC 37721 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | | | ||| || |||| | ||||| ||||| ||||| ||||| Sbjct 37720 GATACTATTGAAACGATTAAAACCAAGATTCGGAATAAAGACGGCATCCCACCAAATCAA 37661 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | ||||| || ||||||||||| || ||||||| ||| || | || || ||| Sbjct 37660 CGTCGTTTGATTTACGCCGGCAAGCAGCTGGAAGATGGTTGCACATTAATGGACTATAAC 37601 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAACAA 27222 || ||||||| ||||| | ||||||||||| ||||| | ||||| |||| || Sbjct 37600 ATACAAAAGGGCTCGACTCTCCATTTGGTTTTACGTTTACTTGGTGGTATAAAAA 37546 >seq20437 Length=48329 Score = 113 bits (124), Expect = 4e-20 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 135473 TTGTGGAACGCGGCACAACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGC 135532 |||||||| | || |||| ||| | | |||||| || ||||||||||| ||| ||||| Sbjct 15954 TTGTGGAATTCAGCTCAACTGCAATTGATGCGAGAGGGTAAAATGCACGGCTTTTTGCGC 15895 Query 135533 ATGTATTGGGCAAAAAAGATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACAC 135592 ||||||||||| |||||||| || ||||||||| | |||| ||| || | || Sbjct 15894 ATGTATTGGGCTAAAAAGATTTTAGAATGGTCTAAAAGCCCTGAAGACGCTTTGGAATTT 15835 Query 135593 GCAATATTTTTTAATGATTACTACAGTTTAGATGGACGCGATTCAAATGGCTACGTAGGT 135652 | || |||| |||||| |||||||| |||||| ||| | ||||| || || ||| Sbjct 15834 TCGCTACTTTTAAATGATAGATACAGTTTGGATGGAACGGATCCCAATGGTTATGTCGGT 15775 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 135648 TAGGTTGTATGTGGTCTATTTGCGGTGTACACGATCAAGGATGGAAGGAGCGCAAAGTGT 135707 ||||||| ||||||||||| | ||| |||| || ||||| ||| || || ||| | | Sbjct 15715 TAGGTTGCATGTGGTCTATAGGAGGTATACATGACCAAGGCTGGGCCGAACGTAAAATCT 15656 Query 135708 TTGGCAAGATTCGCTATATGAACTATGACGGTTGTACAAGAAAATTTAATGTA 135760 |||| || || || |||||||| ||| | ||||| | | |||||||| ||||| Sbjct 15655 TTGGTAAAATACGTTATATGAATTATCAAGGTTGCAAACGAAAATTTGATGTA 15603 >seq16703 Length=4054 Score = 93.3 bits (102), Expect = 4e-14 Identities = 118/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 27064 TCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACG 27123 ||||| ||||||| |||||||||||| || || | || || ||| |||| |||| | Sbjct 2337 TCAAAGCAAAAATTGAAGACAAAGAAGTTATTCCTCTAGACCAGCAGTGTTTGATATTTG 2278 Query 27124 CCGGCAAACAATTGGAAGACAGTTCG-ACCGTTTCCGATTACAACATTCAAAAGGAGTCG 27182 ||||| ||||||||||| | || || | ||||| || || ||| | || ||||| Sbjct 2277 ATGGCAAGCAATTGGAAGA-TGACCGTACTCTCTCCGAATATAATATTGAGAAAGAGTCT 2219 Query 27183 ACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAACAA 27222 || | || || ||||||||||||| ||||||| || || Sbjct 2218 ACTCTTCAAGTGATTTTGCGTTTGCGTGGTGGCACAAAAA 2179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434787538489920